BAC Information

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BAC

Clone NameMSMg01-274C20
Chromosome12 (Build37)
Map Location 21,127,234 - 21,127,478
singlet/doubletsinglet
Overlap geneDdef2
Upstream geneEG668605, LOC668614, LOC100042751, LOC100043371, EG668455, LOC100042755, LOC100043377, LOC625810, 1700030C10Rik, 3110053B16Rik, LOC668698, LOC546752, EG629257
Downstream geneItgb1bp1, Cpsf3, Iah1, Adam17, Ywhaq, LOC100043407, LOC100042796, 6030426L16Rik, LOC434693, EG668645
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-274C20.T7 (MSMg01no274_c20.b1)MSMg01-274C20.TJ (MSMg01no274_c20.g1)
ACCAG412982AG412983
length751751
length of high quality
(start - end)
193 (117 - 309)245 (67 - 311)
definitionCHROMAT_FILE: MSMg01no274_c20.b1 PHD_FILE: MSMg01no274_c20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:41 2005CHROMAT_FILE: MSMg01no274_c20.g1 PHD_FILE: MSMg01no274_c20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCCTT
CTTCCCAGTGTTACAGCTCTCTATGACAGATGCTCTCAGAAGGTCTTTGA
AATGAAGTTCGTGCCTTTTATCCCTTGGGGACAGGATCTTTTATACATTT
TGGGGTGGGTTGGGATCTAAGAGCAGAGGTTTCTATTGGCTTGGTCGTGG
ATGTTAAGGATGCCTCATCTGCATGCAGAGAGACTTCAGACTGATTGTCA
CAGTCCTTTCCATGGCGTGTTGTGGTCACATGTTCCGGGATAGGAACCTG
GTTGGGAGTATATGAAACACCTACGGTCCTCAGGTATGAGGATACTGGTT
TAGTTGTCTCCACCTCCCCGCCCCGAGTTTTCTGTCTGATGGCACGGTCC
ACTGCCCACAATATATAAAATAATATCTTCTCCTCCTCCAGATAGGGTTC
CAGGGAGCTCAGGCTAGTCTTACTTCACAGGATGGTCTCCTATAGCAGGT
CAGAACCGTTATCCCCTGATTCTTCGCAGTCCAAGTGCTAGGGGCACCAT
GCTTGGGTCTCATTTTTTTATTTAATTATATTTTTAAGGTCTATTTTTAG
GTATCTGTACCTATATACGACGGATGTTATATGCAGATGACTGTGGTTGT
CTACCAAGTTCTAAATAAGGCTCTGGAGCCCTGAAGCTGGACTTATGGAG
GGTTCTGAGCTGGGACCTGAATTCCGGACCTCTTGAAAATTGCATCATTT
C
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTGTTGGGTTCACTGCTGTCTGAAGTTTGGGACAA
GCAGGGCTGTGCTGCCTGTGGTTTTTTGAAGTCATGGACAACATGCATTG
GTCTCTTAATTCTGCTTTGTTCTGTGTGTCTCTGGCAAAAGACAGGTTGT
ATTAATGATCAGAAGGTTTTGTGGTCACTAATGTGGGATACTGAATGTTG
CATGAATATTGGCTTTCTTTCTAACATTGATTCATTTATTTGTTTATGTA
TTATGTATTTGTGTGAGCCTGTATGGATAGATGAGCAGGACCCTGAGTTT
GNCTAAATACCCATNACAGNTGCAACTGAGGTTTGTAGATGGTTAGGAGC
CTCCATGTGGAATAAAGNAACTACACACAGTTTCTCTGCGAGATCTGCAA
CTGCTCTTGACCTCTGAGCCATCTGTCCAGCCCTCTGACTTTTGTATATT
GAGGTGTTAGACAAAGGAGAGTGCTGTGTTCATCCTTGGAAGATTTGATG
TCTCACATTGCATCAGTTTCCACGGCTCTTGGTTGATTGCGTTGCGCTGG
GATGATATTAGTACCCAGGGAGATAGGAGGACTGTGGTCCAGTTTTGACC
GGGTCTCTGTTTTACTGTGTGACTTTGAATTTCTCCCAGGAAGTCTGCCC
TCTTATGTGAGGTGTCTAGCTATCTATGGTTACTCTCTCCAGTCTGAAAT
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no274_c20.g1 MSMg01no274_c20.g1 CHROMAT_FILE:
MSMg01no274_c20.g1 PHD_FILE: MSMg01no274_c20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:41 2005
         (245 letters)



>mm_chr12_21127034_21127678
          Length = 645

 Score =  458 bits (237), Expect = e-133
 Identities = 243/245 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgttgggttcactgctgtctgaagtttgggacaagcagggctgtgctgcctgtggttttt 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 tgttgggttcactgctgtctgaagtttgggacaagcagggctgtgttgcctgtggttttt 260

                                                                       
Query: 61  tgaagtcatggacaacatgcattggtctcttaattctgctttgttctgtgtgtctctggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgaagtcatggacaacatgcattggtctcttaattctgctttgttctgtgtgtctctggc 320

                                                                       
Query: 121 aaaagacaggttgtattaatgatcagaaggttttgtggtcactaatgtgggatactgaat 180
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaaggcaggttgtattaatgatcagaaggttttgtggtcactaatgtgggatactgaat 380

                                                                       
Query: 181 gttgcatgaatattggctttctttctaacattgattcatttatttgtttatgtattatgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttgcatgaatattggctttctttctaacattgattcatttatttgtttatgtattatgt 440

                
Query: 241 atttg 245
           |||||
Sbjct: 441 atttg 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)