BAC Information

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BAC

Clone NameMSMg01-274C23
Chromosome12 (Build37)
Map Location 30,225,256 - 30,375,777
singlet/doubletdoublet
Overlap geneMyt1l, LOC100043496
Upstream gene1110015M06Rik, Allc, Colec11, Rps7, Rnaseh1, Adi1, Ttc15, Tssc1, 4833405L11Rik, LOC629608
Downstream genePxdn, Tpo, Sntg2, Tmem18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-274C23.T7 (MSMg01no274_c23.b1)MSMg01-274C23.TJ (MSMg01no274_c23.g1)
ACCAG412988AG412989
length765761
length of high quality
(start - end)		690 (62 - 751)622 (64 - 685)
definitionCHROMAT_FILE: MSMg01no274_c23.b1 PHD_FILE: MSMg01no274_c23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:41 2005CHROMAT_FILE: MSMg01no274_c23.g1 PHD_FILE: MSMg01no274_c23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:41 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,225,256 - 30,225,945)(30,375,156 - 30,375,777)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTTCCAGGATACGCGGAATTCAAATGA
GAATCTGCCGAGGCAATTAAACACTCTGAGAGCAACTGCCACCTTGCCAC
CCAGCAGACTCCACTGGACAAACCTGTAGGTCCAGGATTCAAATTCTGTC
ATTCAGTCCTCTGACAGACACATTTGTTGATGGAGTTAGATTGTTAAATT
CTCTCAGAGTATGAAAGACAAAGGGTGTAGGGATCAGAAAGCCATATAGC
TTTACTTAAAGATGGAATCAATTGCATAAAGCAAGAGATATGGGTAGCTG
ACAGAAATCCTAACCACGTGCTTCAGTAGACTCTAGACTCATTTCTGTTT
CTCCTTTGTTTTACATGTGATGTCTGACTCTAAATTAAAATTCAAGAAAT
TCCCCCATTAAACTCTTCAGAACCTCCCAGTGCCCTTTTCTGTGATTCTG
AGAGAAGTCATGGAGGTCTTGCCGCCCAAATATTCTTTGGCTAATTTGTT
GTTACTGGGATATTGTTAGCTCCAAAACAACCCTTCTCCCTCAGAGACTC
ACAGTGCACGCCAAGCTGTGTCATGTCAGTCCCCCAGGGACACGTTGGCA
CACCTGTTTACAAATGGGCTAGGCCACCTGTTCCTCTAGCTTCAGAGTTA
ATGATCAGAACAGGGTCTGACCACCCAGCTCACATGAGGGGTAGAGAGTC
ACTGTGAGACAGCAGGACACTTCTAACACATACGTCAATAGATGTCTAGT
CAATTCTGAGTAAGT

GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCTACATCAAGGGATAAAATTGAACCAGTGCTCTCAGT
GGCAGGAGGAAAAGACAGCCACACTCTCTGCCTTCACAACTTAGTGCTTA
AGTATCCTTTCCAAAACCAAAACTCTTCCTCCCCCAGGACACTAGACCAC
TCTGCCCAATACTAGGACAAGATCCCAGGGTCACAGCTCTAAATAAAGCA
AGAATGACAATGGCTTTAGGTACAAGTAACTATCCAGAGGGGTTAGAAAT
CAAACAGTGCTTAAATTTTCTTCCCACAGTTTACCAAAAGAAAATATTGC
ACATCTAACTCATTTTCAAACCTTCCCCAACCATGCACCTCAAACTGACA
ATACTAACAGAAATAGAGAATACAAATGGTTTTAGAGGTTTGTGTTGTTG
TTGGTGGTGGGTTTTTTGTTTATTTGTTTGTTTTGTTTTCCTGCAAAGAG
CTGGCATGATACATCATATTTAGGGAGTTAGAGCAAGTGTGGGCACTTTC
CACAGCTGAAGGTGTCATGCTCTGTTGAAATGCAGATTCCCCATGAGGTC
TGAGGTCTGTACCCACTAAGTTTTAGATCACACTACTGCCTATAACCCCT
GGACCACAGTGAGGTGTTTGCTGTGAAAGGGGCACCTTCTGTGAAGAGCA
CCCTTTCAGAAGTAGCTTCATGCTGTTGAGCACTACTGACCACAAAAGAG
TTTCCTTGTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no274_c23.b1 MSMg01no274_c23.b1 CHROMAT_FILE:
MSMg01no274_c23.b1 PHD_FILE: MSMg01no274_c23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:41 2005
         (690 letters)



>mm_chr12_30225056_30226145
          Length = 1090

 Score = 1334 bits (690), Expect = 0.0
 Identities = 690/690 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggcaattaaacactctgagagcaactgccaccttgccacccagcagactccactggacaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggcaattaaacactctgagagcaactgccaccttgccacccagcagactccactggacaa 260

                                                                       
Query: 61  acctgtaggtccaggattcaaattctgtcattcagtcctctgacagacacatttgttgat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acctgtaggtccaggattcaaattctgtcattcagtcctctgacagacacatttgttgat 320

                                                                       
Query: 121 ggagttagattgttaaattctctcagagtatgaaagacaaagggtgtagggatcagaaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggagttagattgttaaattctctcagagtatgaaagacaaagggtgtagggatcagaaag 380

                                                                       
Query: 181 ccatatagctttacttaaagatggaatcaattgcataaagcaagagatatgggtagctga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccatatagctttacttaaagatggaatcaattgcataaagcaagagatatgggtagctga 440

                                                                       
Query: 241 cagaaatcctaaccacgtgcttcagtagactctagactcatttctgtttctcctttgttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagaaatcctaaccacgtgcttcagtagactctagactcatttctgtttctcctttgttt 500

                                                                       
Query: 301 tacatgtgatgtctgactctaaattaaaattcaagaaattcccccattaaactcttcaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tacatgtgatgtctgactctaaattaaaattcaagaaattcccccattaaactcttcaga 560

                                                                       
Query: 361 acctcccagtgcccttttctgtgattctgagagaagtcatggaggtcttgccgcccaaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acctcccagtgcccttttctgtgattctgagagaagtcatggaggtcttgccgcccaaat 620

                                                                       
Query: 421 attctttggctaatttgttgttactgggatattgttagctccaaaacaacccttctccct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 attctttggctaatttgttgttactgggatattgttagctccaaaacaacccttctccct 680

                                                                       
Query: 481 cagagactcacagtgcacgccaagctgtgtcatgtcagtcccccagggacacgttggcac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cagagactcacagtgcacgccaagctgtgtcatgtcagtcccccagggacacgttggcac 740

                                                                       
Query: 541 acctgtttacaaatgggctaggccacctgttcctctagcttcagagttaatgatcagaac 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 acctgtttacaaatgggctaggccacctgttcctctagcttcagagttaatgatcagaac 800

                                                                       
Query: 601 agggtctgaccacccagctcacatgaggggtagagagtcactgtgagacagcaggacact 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 agggtctgaccacccagctcacatgaggggtagagagtcactgtgagacagcaggacact 860

                                         
Query: 661 tctaacacatacgtcaatagatgtctagtc 690
           ||||||||||||||||||||||||||||||
Sbjct: 861 tctaacacatacgtcaatagatgtctagtc 890


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 690
Length of database: 1090
Length adjustment: 10
Effective length of query: 680
Effective length of database: 1080
Effective search space:   734400
Effective search space used:   734400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no274_c23.g1 MSMg01no274_c23.g1 CHROMAT_FILE:
MSMg01no274_c23.g1 PHD_FILE: MSMg01no274_c23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:41 2005
         (622 letters)



>mm_chr12_30374956_30375977
          Length = 1022

 Score = 1195 bits (618), Expect = 0.0
 Identities = 621/622 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctacatcaagggataaaattgaaccagtgctctcagtggcaggaggaaaagacagccaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 822 ctacatcaagggataaaattgaaccagtgctctcagtggcaggaggaaaagacagccaca 763

                                                                       
Query: 61  ctctctgccttcacaacttagtgcttaagtatcctttccaaaaccaaaactcttcctccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 ctctctgccttcacaacttagtgcttaagtatcctttccaaaaccaaaactcttcctccc 703

                                                                       
Query: 121 ccaggacactagaccactctgcccaatactaggacaagatcccagggtcacagctctaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 ccaggacactagaccactctgcccaatactaggacaagatcccagggtcacagctctaaa 643

                                                                       
Query: 181 taaagcaagaatgacaatggctttaggtacaagtaactatccagaggggttagaaatcaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 taaagcaagaatgacaatggctttaggtacaagtaactatccagaggggttagaaatcaa 583

                                                                       
Query: 241 acagtgcttaaattttcttcccacagtttaccaaaagaaaatattgcacatctaactcat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 acagtgcttaaattttcttcccacagtttaccaaaagaaaatattgcacatctaactcat 523

                                                                       
Query: 301 tttcaaaccttccccaaccatgcacctcaaactgacaatactaacagaaatagagaatac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tttcaaaccttccccaaccatgcacctcaaactgacaatactaacagaaatagagaatac 463

                                                                       
Query: 361 aaatggttttagaggtttgtgttgttgttggtggtgggttttttgtttatttgtttgttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 aaatggttttagaggtttgtgttgttgttggtggtgggttttttgtttatttgtttgttt 403

                                                                       
Query: 421 tgttttcctgcaaagagctggcatgatacatcatatttagggagttagagcaagtgtggg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 tgttttcctgcaaagagctggcatgatacatcatatttagggagttagagcaagtgtggg 343

                                                                       
Query: 481 cactttccacagctgaaggtgtcatgctctgttgaaatgcagattccccatgaggtctga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 cactttccacagctgaaggtgtcatgctctgttgaaatgcagattccccatgaggtctga 283

                                                                       
Query: 541 ggtctgtacccactaagttttagatcacactactgcctataacccctggaccacagtgag 600
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 282 ggtctgtacccactaagttttagatcacactactgcctagaacccctggaccacagtgag 223

                                 
Query: 601 gtgtttgctgtgaaaggggcac 622
           ||||||||||||||||||||||
Sbjct: 222 gtgtttgctgtgaaaggggcac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1022
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1012
Effective search space:   619344
Effective search space used:   619344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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