BAC Information

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BAC

Clone NameMSMg01-274D18
Chromosome12 (Build37)
Map Location 109,721,398 - 109,846,228
singlet/doubletdoublet
Overlap geneEml1, Evl
Upstream geneLOC100041251, LOC100040497, LOC668151, Bcl11b, Setd3, Ccnk, EG668158, 1600002O04Rik, Cyp46a1
Downstream geneDegs2, LOC668164, Yy1, Slc25a29, AI132487, Wars, Wdr25, BM948371, LOC668194, Dlk1, Gtl2, Rtl1, 6430411K18Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-274D18.T7 (MSMg01no274_d18.b1)MSMg01-274D18.TJ (MSMg01no274_d18.g1)
ACCAG413025AG413026
length724723
length of high quality
(start - end)
285 (436 - 720)194 (126 - 319)
definitionCHROMAT_FILE: MSMg01no274_d18.b1 PHD_FILE: MSMg01no274_d18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:44 2005CHROMAT_FILE: MSMg01no274_d18.g1 PHD_FILE: MSMg01no274_d18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:45 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,845,945 - 109,846,228)(109,721,398 - 109,721,591)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCATTAGAAATATCGATTCAAGTTCTGTAAGAATTTTTTATTTAAGATGC
CACAGAATTACCAATAATCTTCCTGGGATTCTAAAATCTCGAGACCACCC
TTAAACTAAACTAAACTAAACAGCTACACTCCTCTATGGTCCCCTGCCAC
CATTTCCTAGTCACAGGTACACAGCTCCTGGACTGAAGAAGGTCACTGTC
TAACACTGTGAAGCTATACCTAGTAAGATTCTCTGCAACCACTCTGGGCA
GAATCCTGAAGGAGGGAAGATCATACTCCTGACTCTGGTCTACTTTTCAT
AATGCCATCNCCATGNCCTCACNTCATCCCCCCTAGCTGCCTTTACCTTA
GACCCTTCCACCAGGTCTTTCTTGAAAAAAAAATCAGAGCCTATCACAGT
GAGAACAGTTTCGTTGCTCTATAGCCTTCATTCTTAACCACAAATCGTAA
TGAGACTTTAAATTCTGCTCAAAGAGGCAATGAAGGCTGACTGTATCCAA
ATGCTAACAACAAAATCTGAGCTTCACAAACTACAACTGTCTTAGTGATT
TTCCATTGCTATGATAAGATACTATGACCAAGGCATTTAAAGAAGAAAGA
GTTTATTGGGGGCTTATAGTTTCATGACTAGCATGACCAGCATGGCAACA
GACAGACATGGCATTGGAGAAGGA
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTGACACGTAAATGAAATACAAGAAGC
CGCTTTCTCTTCAGACTTAGACCTTTGGGGTCACGCGCAGGGACAGACAA
GCAGACAGGAAGAAATGCCAGTGTTTATGCATAGCCCCTAAAACACCCAA
TCTCCCTCAAGGACCCAGAGATGAGCTGTGTTATTGTGAGGCCTCTTGCA
AGCTGGTACCCCTGCCATGTCCCAAATAAAGGACATTGTTTTCCCTTGCT
GTCCAGAGGGACTGTAAGGTTTTTTATATTCCCTGCTGGTGATTAAAAGG
AGCTTCCTGTTGCGTGNCTCCAAAACGNGNANCTCTCTNTGGCTGNCCTT
GGTACTGCAAGTCTTCCNGGATAATGTTATCNAAAATTCGTCTGAGCGCT
CTGAAATCCTCTTTAATTCATAAGTGCTCTTGGTTCTCTAAAGGAAATGT
TTTATTTCTTTTTTCTTCTTCTTCTACAAATAGGACAATAGTAACTTTTC
TTTTTAAACTTTAACATTTGGATGCAAATGTGGGCATGACAAATGTCCTG
AAAGAGCCGTGATGGATTATACCCGAGCTGTGTGTGCCAAGCAGGGTGCC
TTGGAGGTTTGAAGCCTGCAGCTGCCTGAAGCTTTTACACACTTTCCCAC
TGGAGCTGAGGAGCTGGCTCGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no274_d18.b1 MSMg01no274_d18.b1 CHROMAT_FILE:
MSMg01no274_d18.b1 PHD_FILE: MSMg01no274_d18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:44 2005
         (285 letters)



>mm_chr12_109845877_109846561
          Length = 685

 Score =  518 bits (268), Expect = e-151
 Identities = 280/284 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agagcctatcacagtgagaacagtttcgttgctctatagccttcattcttaaccacaaat 60
           |||||||||||  |||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct: 352 agagcctatcatggtgagaacagttccgttgctctacagccttcattcttaaccacaaat 293

                                                                       
Query: 61  cgtaatgagactttaaattctgctcaaagaggcaatgaaggctgactgtatccaaatgct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 cgtaatgagactttaaattctgctcaaagaggcaatgaaggctgactgtatccaaatgct 233

                                                                       
Query: 121 aacaacaaaatctgagcttcacaaactacaactgtcttagtgattttccattgctatgat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 aacaacaaaatctgagcttcacaaactacaactgtcttagtgattttccattgctatgat 173

                                                                       
Query: 181 aagatactatgaccaaggcatttaaagaagaaagagtttattgggggcttatagtttcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 aagatactatgaccaaggcatttaaagaagaaagagtttattgggggcttatagtttcat 113

                                                       
Query: 241 gactagcatgaccagcatggcaacagacagacatggcattggag 284
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112 gactagcatgaccagcatggcaacagacagacatggcattggag 69


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no274_d18.g1 MSMg01no274_d18.g1 CHROMAT_FILE:
MSMg01no274_d18.g1 PHD_FILE: MSMg01no274_d18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:45 2005
         (194 letters)



>mm_chr12_109721198_109721791
          Length = 594

 Score =  368 bits (190), Expect = e-106
 Identities = 193/194 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggggtcacgcgcagggacagacaagcagacaggaagaaatgccagtgtttatgcatagc 60
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggggtcacgtgcagggacagacaagcagacaggaagaaatgccagtgtttatgcatagc 260

                                                                       
Query: 61  ccctaaaacacccaatctccctcaaggacccagagatgagctgtgttattgtgaggcctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccctaaaacacccaatctccctcaaggacccagagatgagctgtgttattgtgaggcctc 320

                                                                       
Query: 121 ttgcaagctggtacccctgccatgtcccaaataaaggacattgttttcccttgctgtcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgcaagctggtacccctgccatgtcccaaataaaggacattgttttcccttgctgtcca 380

                         
Query: 181 gagggactgtaagg 194
           ||||||||||||||
Sbjct: 381 gagggactgtaagg 394


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 594
Length adjustment: 8
Effective length of query: 186
Effective length of database: 586
Effective search space:   108996
Effective search space used:   108996
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)