Query= MSMg01no274_m19.b1 MSMg01no274_m19.b1 CHROMAT_FILE:
MSMg01no274_m19.b1 PHD_FILE: MSMg01no274_m19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:14:24 2005
(693 letters)
>mm_chr12_61884512_61885605
Length = 1094
Score = 1214 bits (628), Expect = 0.0
Identities = 679/698 (97%), Gaps = 5/698 (0%)
Strand = Plus / Plus
Query: 1 gaggaggtggaacgggagtatcttcaggatgagacagagactttggataagacaggttcc 60
||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct: 197 gaggaggtggaacaggagtatcttcaggatgagacagagactttggagaagagaggttcc 256
Query: 61 caaaaatacatgggttgaccttagctgtggggatatggaaactgctaaggccacctcctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 caaaaatacatgggttgaccttagctgtggggatatggaaactgctaaggccacctcctc 316
Query: 121 tagtcaggcctgaacaccaatggagtgagagacaccaatctaccaataaaatattcaatc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tagtcaggcctgaacaccaatggagtgagagacaccaatctaccaataaaatattcaatc 376
Query: 181 caaaacttatcttgtctacaagaaatgcatgtactgggtggaacagaga----catatat 236
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 377 caaaacttatcttgtctacaagaaatgcatgtactgggtggaacagagagagacatatat 436
Query: 237 ggcttttgatttgaggactgttccctttagcttacagaccatgccctacagccctaatta 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 437 ggcttttgatttgaggactgttccctttagcttacagaccatgccctacagccctaacaa 496
Query: 297 tacatgtgcctcacagctttttggttttatcaatctctattggtgtacagttgtttataa 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tacatgtgcctcacagctttttggttttatcaatctctattggtgtacagttgtttataa 556
Query: 357 caatctctaatgagcctttcttatttctgcgatttcacttgttgtattttatctttcttt 416
||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct: 557 caatctctaatgagcctttcttatttctgtgatttcacttgtagtattttatctttcttt 616
Query: 417 tttaatttttagtttagttttggttcattaacagaagttttgccaacttttttt-cagtt 475
||||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 617 tttaatttttagtttctttttggttcattaacagaagttttgccaacttttttttcaatt 676
Query: 476 ttgacctgctctttgtttcactggacttttttttactgttttgaattccattttgcttat 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 ttgacctgctctttgtttcactggacttttttttactgttttgaattccattttgcttat 736
Query: 536 ctgtacttatcattattgaacattatgtttgtgattcatgtgttcttgtccactaaattg 595
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 ctgtacttatcattattggacattatgtttgtgattcatgtgttcttgtccactaaattg 796
Query: 596 cctctccagccctctgaacattttacttatttatatttaagaataattatatatgtaata 655
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct: 797 cctctccagccctctgaatattttacttatttatatttaagaataattatatatataata 856
Query: 656 catatatatatatacatacatatatatgtcattctcta 693
|||||||||||||| |||||||||||||||||||||||
Sbjct: 857 catatatatatatatatacatatatatgtcattctcta 894
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 51
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 693
Length of database: 1094
Length adjustment: 10
Effective length of query: 683
Effective length of database: 1084
Effective search space: 740372
Effective search space used: 740372
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no274_m19.g1 MSMg01no274_m19.g1 CHROMAT_FILE:
MSMg01no274_m19.g1 PHD_FILE: MSMg01no274_m19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:14:25 2005
(672 letters)
>mm_chr12_62021958_62023029
Length = 1072
Score = 1261 bits (652), Expect = 0.0
Identities = 667/672 (99%)
Strand = Plus / Minus
Query: 1 actaaggagtgaccctgtcccataccagaagggaactcaaagaacgtacggaggtaattt 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 872 actaaggagtgaccctgtcccataccagaagggaactcaaagaacgtaaggaggtaattt 813
Query: 61 tgaaaaccaaaataaaatattttatgggaactgtaaaagcttattttagcaaagcaacac 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 812 tgaaaaccaaaataaaatattttatgggaactgtaaaagcttattttagcaaagcagcac 753
Query: 121 actactaaaaggaaggagaaagaaagatgctctaacccaaagttctttttctgtcctata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 actactaaaaggaaggagaaagaaagatgctctaacccaaagttctttttctgtcctata 693
Query: 181 ttttaccaactctgtcttgatttgaacatttttgtcacctaactttaaccagaatccttc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 ttttaccaactctgtcttgatttgaacatttttgtcacctaactttaaccagaatccttc 633
Query: 241 taattctgaaagactagtgagggctccaggctaagatcacagccttcatggtcataataa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 taattctgaaagactagtgagggctccaggctaagatcacagccttcatggtcataataa 573
Query: 301 gctacaggttaacgttgggtacaatagctcagatttataggaggctgcccagatggcaat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 gctacaggttaacgttgggtacaatagctcagatttataggaggctgcccagatggcaat 513
Query: 361 ggaatggcaaaagccagaggccagttgttcccggagacaaaaggcaattcattataccaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 ggaatggcaaaagccagaggccagttgttcccggagacaaaaggcaattcattataccaa 453
Query: 421 gaaaagggagcttagaaaatgtcactgatgtaaatctaagaaatcgaaccttcttttttc 480
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 gaaaagggagattagaaaatgtcactgatgtaaatctaagaaatcgaaccttcttttttc 393
Query: 481 tttcacccttacttgaaagtggggatgaaagaaagtaacagtgcacatgtgctttgcttc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tttcacccttacttgaaagtggggatgaaagaaagtaacagtgcacatgtgctttgcttc 333
Query: 541 tattctctctattgcagttccttcatttctccttcttgccgtagtaggaggccggagcct 600
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 332 tattctctctattgcagttccttcatttctccttcttgccgtagtaggaggctggagcct 273
Query: 601 aagttgtctgatgcagcaacccacatgcatacatatccatgactatatgatttgcgatag 660
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 272 aagttgtctgatgcagcaacccacatgcatacatatccatgactatatgatttgtgatag 213
Query: 661 cttttctctggt 672
||||||||||||
Sbjct: 212 cttttctctggt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1072
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1062
Effective search space: 703044
Effective search space used: 703044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
