BAC Information

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BAC

Clone NameMSMg01-274O07
Chromosome12 (Build37)
Map Location 101,440,794 - 101,441,138
singlet/doubletsinglet
Overlap geneCalm1
Upstream geneChes1, LOC100039892, 2610021K21Rik, Tdp1, LOC100040041, Kcnk13, Psmc1, BC002230
Downstream geneTtc7b, Rps6ka5, LOC100040123, 9030617O03Rik, EG667148, Gpr68, 0610010D24Rik, LOC100040184, Smek1, 4930463M05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-274O07.T7 (MSMg01no274_o07.b1)MSMg01-274O07.TJ (MSMg01no274_o07.g1)
ACCAG413492AG413493
length719723
length of high quality
(start - end)
345 (375 - 719)286 (77 - 362)
definitionCHROMAT_FILE: MSMg01no274_o07.b1 PHD_FILE: MSMg01no274_o07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:31 2005CHROMAT_FILE: MSMg01no274_o07.g1 PHD_FILE: MSMg01no274_o07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAGCACTTTTCTAAAATACTGATTAGGAAGAAAAGCCCCACAAT
TTTAAAGTATAATTAGGAAAGCCCGCGTTATTATCAACCAAACTTGTCTA
GATTAAATTATGATCTTTTCTTTCTCTGCGTAGGCTGATCAGCTGACTGA
AGAGCAGATTGCTGGTAAGTTGAAGACTCTGGAGAGTCCCCAGGAAACTG
GGACTAGGCTCTGCTTTGGCCTTGTATCTCCTCTCTTGTCCCTCCCATCT
ACAATCTGTGTGGTTTTCTAAGAATTCTTAAGCAGCAACAGTGAGGTCAG
GTATTTTAGGGATGACATGGAATGGACTCTGCTGTGCCTGTCACTCTCAG
GTGTGCATAGCTGTGCTGTAGAATGAGATCCACCGAAGCCGCTACTCTGA
AATAGACTTCATAGTTCTTAGGCCATAAATCTTTTAGTAATCGACCAGGA
AAACTCCTAAAACACATGGAAAAGGTAAACATTAGAGTTGTAATAATTGG
AAAATGAGACATCAAATTGGGTTTTGTTTTGAGATGGATGTCTTATACTG
TAGTGCTGGTTATTCTGGAACTTGCTATGTAGACCAGGCTAGATTTGAAC
TTAGAAGATCTGTAGTTTGCCTCCAGAGTGCCCCCATGCCCAGCAACTCA
CCTTAATGTATTGCTCACT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTATGAACACAGTTAAAAATAAT
TCTGAAGAAGTTAAATTCATGCCTCAGACAAATATAAAATCAACACATTA
AATATTTTATTTACTTTATTCACTTGTGAAGAAGTCAGCACAAGGTTATG
GCCTATTCAAAGAGGAGTTTGTAACATATATAGGCAGAAATGCTGAAATT
AATTCACGAGTAGATGAAAAATAGTATCGTATAAGATGACAGACTATATT
TTATGGGGCTATCTTTTCCACGGGATAGAAATCAATTGTATCCCCACAGA
TAAAATTTATTTGTTTTAACGCCCTCCCCCACTAGGTTATCTCCTTCTGC
CCCTTCAGAACTGTGTAGTACTGTAGATACCAGACCGTCAAAATGCTACC
CTTTTGAGTCAGCAGATCCAGGAAAGAACAGCCAGTCGACCCCCCAGGAG
GTCACTAACAAACACCCCATAATCTGTTTGCCCCAAGTCTGGGGCGCACT
GCCAGAGTGATTTAGCAAAGCGTTATCCGATGATTCAAGTGACTTCCTGT
GACTCAGATGCTCAGAAGGCTTCTCAATTCATGGCAAGGTGGATGGATGA
CATACAGCATGCTCTGCAGAGTCAGGAGGCAACAAGGTGTCTGTCACTCG
GTGGTGCCAGGAGAGTATGAGGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no274_o07.b1 MSMg01no274_o07.b1 CHROMAT_FILE:
MSMg01no274_o07.b1 PHD_FILE: MSMg01no274_o07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:14:31 2005
         (345 letters)



>mm_chr12_101440594_101441338
          Length = 745

 Score =  613 bits (317), Expect = e-180
 Identities = 338/345 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   gactctgctgtgcctgtcactctcaggtgtgcatagctgtgctgtagaatgagatccacc 60
           ||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct: 201 gactctgctatgcctgtcacactcgggtgtgcatagctgtgctgtagaatgagatccacc 260

                                                                       
Query: 61  gaagccgctactctgaaatagacttcatagttcttaggccataaatcttttagtaatcga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaagccgctactctgaaatagacttcatagttcttaggccataaatcttttagtaatcga 320

                                                                       
Query: 121 ccaggaaaactcctaaaacacatggaaaaggtaaacattagagttgtaataattggaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 321 ccaggaaaactcctaaaacacatggaaaaggtaaacattagagttgtaataattggaaag 380

                                                                       
Query: 181 tgagacatcaaattgggttttgttttgagatggatgtcttatactgtagtgctggttatt 240
           ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 381 tgagacatcaaattgggttttgttttgagatggatgtctcatactgtagtgccggttatt 440

                                                                       
Query: 241 ctggaacttgctatgtagaccaggctagatttgaacttagaagatctgtagtttgcctcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctggaacttgctatgtagaccaggctagatttgaacttagaagatctgtagtttgcctcc 500

                                                        
Query: 301 agagtgcccccatgcccagcaactcaccttaatgtattgctcact 345
           |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 501 agagtgccaccatgcccagcaactcaccttaatgtattgctcact 545


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 745
Length adjustment: 9
Effective length of query: 336
Effective length of database: 736
Effective search space:   247296
Effective search space used:   247296
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)