BAC Information

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BAC

Clone NameMSMg01-275C07
Chromosome12 (Build37)
Map Location 80,946,042 - 81,036,561
singlet/doubletdoublet
Overlap genenone
Upstream geneAtp6v1d, LOC100041878, Eif2s1, Plek2, 6330442E10Rik, Plekhh1, Pigh, LOC666722, Arg2, Vti1b, Rdh11, Rdh12, Zfyve26, Rad51l1, LOC100041968
Downstream geneLOC435309, LOC100041674, LOC666754, Zfp36l1, Actn1, Wdr22, Exdl2, 2310002D06Rik, Galntl1, LOC100041715, Erh, Slc39a9, 3830431G21Rik, Gm1568, 4933426M11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-275C07.T7 (MSMg01no275_c07.b1)MSMg01-275C07.TJ (MSMg01no275_c07.g1)
ACCAG413677AG413678
length721720
length of high quality
(start - end)		650 (72 - 721)636 (79 - 714)
definitionCHROMAT_FILE: MSMg01no275_c07.b1 PHD_FILE: MSMg01no275_c07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:49 2005CHROMAT_FILE: MSMg01no275_c07.g1 PHD_FILE: MSMg01no275_c07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:50 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,946,042 - 80,946,691)(81,036,072 - 81,036,561)
sequence
CATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCCGC
GGAATTCCTTATTTACCGTTGGAACTCTTCTGAGCTGATGCCTAAAGTAC
AAAAAGTTTGCAAGGAACCTGGCTGGTGACACTGATGGAAAGGGACAGAC
AATGAGGCCTGGAATAATGTCCTTTGTAGGGACGTTCAGCTCCTGCTAGC
CCAGACCCCAGTAGAGTCAACATTCCATGCAGTGTGTCAAGGCACTGGAC
TGATCTGACTCCAGGCCCAGGCATGCGCAGAGCACAGTGGTGACAGCATG
CAGTTCAGGCTGGGCTCTCTACCCTGCAGAAAATGGGCTCCCTGTGCTTG
CTAGTCACACCTTTCTTAGTGTCGCATGTCAAGCTACCCGACAAGACGTG
GGAGGGTGCCAACTGATTCTTGCTCCCTTGCTTATCCTCAAAACAGGCCC
ACGAGTCTTTAGCTCCCAAAGCCTTGGAAGGTCCCCACTGTCATCTCAAC
TGGAGGGTCCTCCCTAGAGGCTTTGCTTTCAGGGAAGGGTAAGACTCATC
TGCTTGCTCTACCCCAGCACCCCAAGTGAGACTTTGACTCCATGCCCATC
CCAGAAGCTCCCTGTTCCTTTGTTCCTGCAGCTAGCTTACAGGAGTCTCA
GAGACATCATCCTAGCTCTCTGGGATCCTGACTGTAGGACAACCAGCATA
GGACCCACAATTCCAAGAGGA

CCCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCCATTCCCTAAGAGCTTGTCAT
CCTTAACTCCCCAGAGTGCAAGGACCTTGGGCAACACACTCATCACTCCC
ATCATGAAAAGCCAATTCAGGTGCTTGAAAATGCTGGTTCAATTAGCCCC
AACTTCTAGGTCTTCTTTCTATGTGCCATCTCCAGAATCCTTGGGTAGAT
TGATGGTCCTCTGTGTGGCTATGGCTCATTCTTTACATTGTGACTTAAGC
TCCATTCTCCAACAGCCCTCCTTCTGGGCTGTGAGCTCCTTAGAGGGAAC
TATGCTAAAGTACTTTTGTTTGTTTGTTTGAGATGGGGCCTCACTATGTA
GCCTGGCTGTTCTGGAACTGGCTATGTAGACTAAGCTGGCCTCAAACTTA
TGGATATTACCTGCCTCTGTTTCCTGAATGCTGAGAATAAAGGCATGTAC
CATTGTCCCCAGCTAGTACTGTCAAACAGTCAATCTTTCCCAATGTTTGT
TTCATAGACCTATAATGTGACCAAGGGATGGTTGATGGTGTATTCTGTTC
TGTCTGACAAATAACAACAGAAATGTCACCTTCATCACCATCAACTTAAT
AGGCTTAGGCCTAAGACTTCCCACTGATCTCAGCCCTGTATAGAAAGAGA
TTTTTTTTTCTAAGAAGCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no275_c07.b1 MSMg01no275_c07.b1 CHROMAT_FILE:
MSMg01no275_c07.b1 PHD_FILE: MSMg01no275_c07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:14:49 2005
         (650 letters)



>mm_chr12_80945842_80946891
          Length = 1050

 Score = 1218 bits (630), Expect = 0.0
 Identities = 645/650 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaactcttctgagctgatgcctaaagtacaaaaagtttgcaaggaacctggctggtgaca 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 201 gaactcttctgagctgatgcctaaagtacaaaaagtttacaaggaacctggctggtgaca 260

                                                                       
Query: 61  ctgatggaaagggacagacaatgaggcctggaataatgtcctttgtagggacgttcagct 120
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 261 ctgatggaaagggacagacaatgaggcctggaataatgtcttttgtagggacgttcagct 320

                                                                       
Query: 121 cctgctagcccagaccccagtagagtcaacattccatgcagtgtgtcaaggcactggact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctgctagcccagaccccagtagagtcaacattccatgcagtgtgtcaaggcactggact 380

                                                                       
Query: 181 gatctgactccaggcccaggcatgcgcagagcacagtggtgacagcatgcagttcaggct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatctgactccaggcccaggcatgcgcagagcacagtggtgacagcatgcagttcaggct 440

                                                                       
Query: 241 gggctctctaccctgcagaaaatgggctccctgtgcttgctagtcacacctttcttagtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gggctctctaccctgcagaaaatgggctccctgtgcttgctagtcacacctttcttagtg 500

                                                                       
Query: 301 tcgcatgtcaagctacccgacaagacgtgggagggtgccaactgattcttgctcccttgc 360
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcgaatgtcaagctacccgacaagacgtgggagggtgccaactgattcttgctcccttgc 560

                                                                       
Query: 361 ttatcctcaaaacaggcccacgagtctttagctcccaaagccttggaaggtccccactgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttatcctcaaaacaggcccacgagtctttagctcccaaagccttggaaggtccccactgt 620

                                                                       
Query: 421 catctcaactggagggtcctccctagaggctttgctttcagggaagggtaagactcatct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 catctcaactggagggtcctccctagaggctttgctttcagggaagggtaagactcatct 680

                                                                       
Query: 481 gcttgctctaccccagcaccccaagtgagactttgactccatgcccatcccagaagctcc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gcttgctctaccccagcaccccaagtgagactttgactccatgcccatcccagaagctcc 740

                                                                       
Query: 541 ctgttcctttgttcctgcagctagcttacaggagtctcagagacatcatcctagctctct 600
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 741 ctgttcctttgttcctgcagctagcttacagaagtctcagagacatcatcctagctctct 800

                                                             
Query: 601 gggatcctgactgtaggacaaccagcataggacccacaattccaagagga 650
           ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 801 gggatcctgactgtaggacgaccagcataggacccacaattccaagagga 850


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1050
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1040
Effective search space:   665600
Effective search space used:   665600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no275_c07.g1 MSMg01no275_c07.g1 CHROMAT_FILE:
MSMg01no275_c07.g1 PHD_FILE: MSMg01no275_c07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:14:50 2005
         (636 letters)



>mm_chr12_81036072_81037107
          Length = 1036

 Score =  940 bits (486), Expect = 0.0
 Identities = 489/490 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccattccctaagagcttgtcatccttaactccccagagtgcaaggaccttgggcaacaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 ccattccctaagagcttgtcatccttaactccccagagtgcaaggaccttgggcaacaca 431

                                                                       
Query: 61  ctcatcactcccatcatgaaaagccaattcaggtgcttgaaaatgctggttcaattagcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 ctcatcactcccatcatgaaaagccaattcaggtgcttgaaaatgctggttcaattagcc 371

                                                                       
Query: 121 ccaacttctaggtcttctttctatgtgccatctccagaatccttgggtagattgatggtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 ccaacttctaggtcttctttctatgtgccatctccagaatccttgggtagattgatggtc 311

                                                                       
Query: 181 ctctgtgtggctatggctcattctttacattgtgacttaagctccattctccaacagccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 ctctgtgtggctatggctcattctttacattgtgacttaagctccattctccaacagccc 251

                                                                       
Query: 241 tccttctgggctgtgagctccttagagggaactatgctaaagtacttttgtttgtttgtt 300
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tcctcctgggctgtgagctccttagagggaactatgctaaagtacttttgtttgtttgtt 191

                                                                       
Query: 301 tgagatggggcctcactatgtagcctggctgttctggaactggctatgtagactaagctg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 tgagatggggcctcactatgtagcctggctgttctggaactggctatgtagactaagctg 131

                                                                       
Query: 361 gcctcaaacttatggatattacctgcctctgtttcctgaatgctgagaataaaggcatgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 gcctcaaacttatggatattacctgcctctgtttcctgaatgctgagaataaaggcatgt 71

                                                                       
Query: 421 accattgtccccagctagtactgtcaaacagtcaatctttcccaatgtttgtttcataga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70  accattgtccccagctagtactgtcaaacagtcaatctttcccaatgtttgtttcataga 11

                     
Query: 481 cctataatgt 490
           ||||||||||
Sbjct: 10  cctataatgt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1036
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1026
Effective search space:   642276
Effective search space used:   642276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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