BAC Information

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BAC

Clone NameMSMg01-275C22
Chromosome12 (Build37)
Map Location 57,737,263 - 57,737,554
singlet/doubletsinglet
Overlap genenone
Upstream geneGarnl1, Brms1l, LOC100039915, LOC382600, LOC382601, Mbip, EG621837, E030019B13Rik, Titf1, LOC100039993, Nkx2-9
Downstream genePax9, Slc25a21, AU021838, LOC100040044, Foxa1, 4921506M07Rik, EG217600
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-275C22.T7 (MSMg01no275_c22.b1)MSMg01-275C22.TJ (MSMg01no275_c22.g1)
ACCAG413706AG413707
length750753
length of high quality
(start - end)
306 (435 - 740)284 (79 - 362)
definitionCHROMAT_FILE: MSMg01no275_c22.b1 PHD_FILE: MSMg01no275_c22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:52 2005CHROMAT_FILE: MSMg01no275_c22.g1 PHD_FILE: MSMg01no275_c22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTCTATATCTCCCACAATGAAATTGGTATGGTTTAAATAAAAAAAAAA
AATCAAAGGACTATAACCTGAACCCTTATTCAATTAATTCTCAGTAATGG
ATTAATAAAAATTATTGTCTGTGAGACCCACCACTGGACAAAGTGCAGAA
TGAGAGACTTTGAGGGTTTGTTAATGAGAGTCTTAAATGGGGTTTATTCA
TTAAAGCCCTCTCCTCAAGGCTCAGGGATCGATTGAGAAGAGGAGGCAAA
AATACTGTAAGAGCCAGAGCTGGCGAATGACTCCAAGGAAAGGGTGTCTT
CCAGACGTGACTGATTGTTGCAGCACACCCCGGCCTGCACAGGTTCCAGC
CAGCTGGGTCCCAGCACTAAGAAGAGGAAATAAACACAGGCTCCCATGGC
TACCCAGAAACTATCTGCAATTGATAGCTGCCAGCAAAGGAACTCAGTTT
TCTCCAAAGGAGTCTCTCTGGGTATAGTGACCACACTTCCTCGGAAGCCC
CATGACCAGAATTCAATTGTATTTTTGTCTCATTTTGCTTTATTTGGGCC
GTTGTTGTTGTTCTCTCATTTTGCTTCTTTATTTTGATGTTTTCGTTTTT
TTTTTTAATGTGGGTATCTATTTGTTAATTGTTCTTTTGTTTTTGGTTTG
TTTCTTTTTGAGAGAGAGAGAGAATATAAACTTGGGAAGTATGGAGGCAG

ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCATTTTCATAAGCCCTTCAT
GCCTTTCTTCGACCACTTTCTGTTAACAGTTACTCTTTGTATGAATACAC
ACACACACACACACACACACACACACACACACACACACACACACACGGTT
GGATTCCCCTCCTAAAATGATTTTCTCATCCTGTATCACCAAACTAGAAA
CTCAATGTGTAAGAGACCACCCTTTCCCTTTTCCAACCTATAAGACTCCT
TTTCTCTTCCTTTCAGTTTGGTTCTTAGTACCTGTTCAAAGCTAGTAAGT
ACCATTCGTTAATTAGTGAGCCGCNACCCCCCGCTGTGTGTGGGGGTGGG
GGTGGNTNTTTNNTTNNCNTAAAAAAAAAAAAAAACATGTTGGGTGGGGG
GCTTTCCTTCCCCTCCCCCTCTCCCCTTTTCCCTACCCCACCTCTTATAC
CACATCGTTTTGACACCCCTCCTCCCCATTTTTTTTTCTTTCCACTTTAC
CCTACACGCTTGCCCTTCCCCCTTTCCACCTTCCTTTCAATCTTACCCAT
TCCCGTTTCCCCCCATTACACCATTACCTAGCATTTCACCCCCCATTTTC
TTTTACCATTTCCTTTTCCGCCCCACCCCCACCCTCACTTTTCATTTCCA
CCACCACCGTTCCCTTTAAATGATAATATTCGGCAATCCTATTGTCCGAC
ACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no275_c22.g1 MSMg01no275_c22.g1 CHROMAT_FILE:
MSMg01no275_c22.g1 PHD_FILE: MSMg01no275_c22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:14:52 2005
         (284 letters)



>mm_chr12_57737075_57737758
          Length = 684

 Score =  514 bits (266), Expect = e-150
 Identities = 280/292 (95%), Gaps = 12/292 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcattttcataagcccttcatgcctttcttcgaccactttctgttaacagttactcttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttcattttcataagcccttcatgcctttcttcgaccactttctgttaacagttactcttt 248

                                                                       
Query: 61  gtatgaatacacacac------------acacacacacacacacacacacacacacacac 108
           ||||||||||||||||            ||||||||||||||||||||||||||||||||
Sbjct: 249 gtatgaatacacacacacacacacacaaacacacacacacacacacacacacacacacac 308

                                                                       
Query: 109 acacacacacggttggattcccctcctaaaatgattttctcatcctgtatcaccaaacta 168
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 acacacacacggttggattcccctcctaaaatgattttctcatcctgtatcaccaaacta 368

                                                                       
Query: 169 gaaactcaatgtgtaagagaccaccctttcccttttccaacctataagactccttttctc 228
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 gaaactcaatgtgtaagagaccaccctttcccttttccaacctataagactccttttctc 428

                                                               
Query: 229 ttcctttcagtttggttcttagtacctgttcaaagctagtaagtaccattcg 280
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 ttcctttcagtttggttcttagtacctgttcaaagctagtaagtaccattcg 480


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 58
Number of extensions: 19
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)