BAC Information

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BAC

Clone NameMSMg01-275M04
Chromosome12 (Build37)
Map Location 100,029,390 - 100,029,912
singlet/doubletsinglet
Overlap geneEml5
Upstream geneLOC628351, LOC100039770, LOC667746, Galc, Gpr65, Kcnk10, Spata7, Ptpn21, Zc3h14
Downstream geneLOC100039845, Ttc8, EG667779, Ches1, LOC100039892, 2610021K21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-275M04.T7 (MSMg01no275_m04.b1)MSMg01-275M04.TJ (MSMg01no275_m04.g1)
ACCAG414122AG414123
length715726
length of high quality
(start - end)
668 (48 - 715)37 (79 - 115)
definitionCHROMAT_FILE: MSMg01no275_m04.b1 PHD_FILE: MSMg01no275_m04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:33 2005CHROMAT_FILE: MSMg01no275_m04.g1 PHD_FILE: MSMg01no275_m04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTTTGGATTCTAGCAGGTTTGATTTACATAGTGAAATTGAGGC
TACCCAGGGATATATGGCAAGACCATTTCAAAATACAAAACAAAACATAT
GTAGGAAACTCCTATTTTTAAATTTATTTTACAAGGGAATACATGAGTTT
GTTATCCTATCTTGAATTCTTAATGGCATGCTGATTCTGGGACCCTTTTT
GATTCAACACTGTCCTACACTTTATCAGTTTCCATGGCTCAACAAGTTCT
TGAGAAGAACTTGTATAATGACCTTGAAGATTTCAGGCACTTTCCTAAAC
TGTCAACGGCAATGCACATCTTTAACCCAGCACTTGGGAGGCAGAGGCAA
TAGATACAGCACAGCCATTTTAATCATTAAACAGAACTATCTGTGGTACA
TTTGCTTTCCCTCTATCTAGTATTCTAGGAGATGAAGTTATGGGAATCTG
GTCCAGACATGCTGAGAAGGCGGATGTCACCTGTGCCTGTGTGTCTCACT
CAGGAATCAGCCTTGTGACAGGAGATGACTTTGGCATGGTTAAATTATAT
GACTTTCCATGCCCAGAAAAATTTGTAAGTCTGTGTAGCATTTTGTATTA
CTTTAGTTGAACCTTAGATGAGTCACCCCCCTCGCCCCCCCCCACATATT
TTAGAACGTTGCAGN
TTCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCAATCCACTTCACCACGCTCAC
TGCACTGACCCCAACTGACTGACCCCAACTACACTGACTCACTGACCTGC
CCTTTCAAACATGCTCCTTCCTTCTGTAAACTAACCTTACTTTTATTGCT
TGGGATTAAAGGGGTATACTCAAGGTGTGTCTATTCCAGCCAGAGTAGCC
ATGTTGCTGGATTGAAATTCCTCTATATGAACTGCCTATAAATAGCACTG
TCCACAGAGATTCTATAAACTACCAGAACCCAACAGGATGACTGTGTGTG
TGTGTGTGTGTGTTTGCGCCCCCCTCCCCCGTCTCTGTGTAAATAATCTG
ACCCCTTACTCATAGTTATCATATAAAAAATATACCTTTCCCGTCCATGA
TTCACAAACCCCCTTACCTTTAAATTTCACTGCATTCCAACCACTGGACT
TTACCCTACCACCACCACTATCAAAGTGAATCACAATATTTGCAGCTTCC
CACCTTACGCATTTTCTCTTCTGAGATGTCGACCCTCTGCTGAATCCCCT
GCTGACTCAAACTCAGACACATATCCCACTTGTCTTTTTTAGCCTTTATT
TACAATCGTCACACTATGCATTCTGATTATTCACGTCTGTCTTGAGCACC
TTAATTACGCTCTTCCCTGAAAGTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no275_m04.b1 MSMg01no275_m04.b1 CHROMAT_FILE:
MSMg01no275_m04.b1 PHD_FILE: MSMg01no275_m04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:15:33 2005
         (668 letters)



>mm_chr12_100028838_100029912
          Length = 1075

 Score =  946 bits (489), Expect = 0.0
 Identities = 512/523 (97%), Gaps = 7/523 (1%)
 Strand = Plus / Minus

                                                                        
Query: 152  ttgttatcctatcttgaattcttaatggcatgctgattctgggaccctttttgattcaac 211
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1075 ttgttatcctatcttgaattcttaatggcatgctgattctgggaccctttttgattcaac 1016

                                                                        
Query: 212  actgtcctacactttatcagtttccatggctcaacaagttcttgagaagaacttgtataa 271
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1015 actgtcctacactttatcagtttccatggctcaacaagttcttgagaagaacttgtataa 956

                                                                        
Query: 272  tgaccttgaagatttcaggcactttcctaaactgtcaacggcaatgcacatctttaaccc 331
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 955  tgaccttgaagatttcaggcactttcctaaactgtcaacggcaatgcacatctttaaccc 896

                                                                        
Query: 332  agcacttgggaggcagaggcaatagatacagcacagccattttaatcattaaacagaact 391
            |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct: 895  agcacttgggaggcagaggcgatagatacagcacagccatcttaatcattaaacagaact 836

                                                                        
Query: 392  atctgtggtacatttgctttccctctatctagtattctaggagatgaagttatgggaatc 451
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835  atctgtggtacatttgctttccctctatctagtattctaggagatgaagttatgggaatc 776

                                                                        
Query: 452  tggtccagacatgctgagaaggcggatgtcacctgtgcctgtgtgtctcactcaggaatc 511
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775  tggtccagacatgctgagaaggcggatgtcacctgtgcctgtgtgtctcactcaggaatc 716

                                                                        
Query: 512  agccttgtgacaggagatgactttggcatggttaaattatatgactttccatgcccagaa 571
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715  agccttgtgacaggagatgactttggcatggttaaattatatgactttccatgcccagaa 656

                                                                        
Query: 572  aaatttgtaagtctgtgtagcattttgtattactttagttgaaccttagatgagtcaccc 631
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 655  aaatttgtaagtctgtgtagcattttgtattactttagttgaatcttagatgagtcaccc 596

                                                       
Query: 632  ---ccctcgccccccccc----acatattttagaacgttgcag 667
               ||| |||||||||||    |||||||||||||||||||||
Sbjct: 595  tcccccccgccccccccctcccacatattttagaacgttgcag 553


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1075
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1065
Effective search space:   700770
Effective search space used:   700770
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)