BAC Information

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BAC

Clone NameMSMg01-276C01
Chromosome12 (Build37)
Map Location 98,399,105 - 98,399,438
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039664, EG628277
Downstream geneLOC382626, LOC100039743, LOC667732, LOC628351, LOC100039770, LOC667746
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-276C01.T7 (MSMg01no276_c01.b1)MSMg01-276C01.TJ (MSMg01no276_c01.g1)
ACCAG414397AG414398
length711715
length of high quality
(start - end)
---334 (77 - 410)
definitionCHROMAT_FILE: MSMg01no276_c01.b1 PHD_FILE: MSMg01no276_c01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:00 2005CHROMAT_FILE: MSMg01no276_c01.g1 PHD_FILE: MSMg01no276_c01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
TATCGTTTTTCTCCCGCAATTATAGTTXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXATTCATAAACATCTGCTGGACACCGTCACCA
GAGCGGTATTAGTATAAGCCAATACGATCACCGCGCTCGTGACCTTCATA
CTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCACCTCGCAGCA
TCTTGTGTGTT
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATAAATTTAAGAACCAGAGATGTC
TACTGGCTAATGAAAATATATGTATGTGATTATAGACTTTGTTATAAGAA
AGAATAATTGAAACTTAGAAATTCCTAGTCAGTGCCTATACATACATAGC
TGTTAGTCAAGTGAGATAATACTTTAAAAATAATTTGTTTAATAAAACTC
ATATAAATATTTTTGAATGGATAGCGTTTTACTTCTACAAGATTTAACAA
AAGAGAAATGTATTTGTACCATTCATGGCAAATATGTCACTGAGTGTGGG
TTTCCCTGATTTTTTTGCCCCCCCCCCCCAGTAGGGCAGTGGGAGAGACA
TTGAGCATGTCACCCCAAGCCCTAAGAATATGTCCTGTGAATGATGTCTC
CAGGACCTTGGGTGAGTAGTCACATCAACTTTACTTAGGGTGATTGAAAG
CTTTTAACGTTTTGAGGCATCGAGTGTCTGGACATTCAGGATAGGCAAAG
GTCCCTGGCTGGGGGTTAAGTGTACCTGGGATAACTAATTAGCACAGCAA
AGCATTTCAGGAATCTTATATGGTGCCTGAAGAAGTTTTAGCAGGAGAGA
GGAAGTTGATTCTATAAACTATCTGAGAGGACTTGACATTCCTCAGGTAA
AAACAAGAGTTGGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no276_c01.g1 MSMg01no276_c01.g1 CHROMAT_FILE:
MSMg01no276_c01.g1 PHD_FILE: MSMg01no276_c01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:16:00 2005
         (334 letters)



>mm_chr12_98399093_98399826
          Length = 734

 Score =  495 bits (256), Expect = e-144
 Identities = 313/344 (90%), Gaps = 23/344 (6%)
 Strand = Plus / Minus

                                                                       
Query: 1   ataaatttaagaaccagagatgtctactggctaatgaaaatatatgtatgtgattataga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 346 ataaatttaagaaccagagatgtctactggctaatgaaaatatatgtatatgattataga 287

                                                                       
Query: 61  ctttgttataagaaagaataattgaaacttagaaattcctagtcagtgcctatacataca 120
           |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct: 286 ctttgttataagaaagaacaattgaaacttagaaattcctagtcagtacctatacataca 227

                                                                       
Query: 121 tagctgttagtcaagtgagataatactttaaaaa-taatttgtttaataaaactcatata 179
           |||||||||||||||||| ||||||||| ||||| || ||||||||||||||||||||||
Sbjct: 226 tagctgttagtcaagtgaaataatacttaaaaaaatagtttgtttaataaaactcatata 167

                                                                       
Query: 180 aatatttttgaatggatagcgttttacttctacaagatttaacaaaagagaaatgtattt 239
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 aatatttttgaatggataacgttttacttctacaagatttaacaaaagagaaatgtattt 107

                                                                       
Query: 240 gtaccattcatggcaaatatgtcactgagtgtgggtttccctga------tttttttgcc 293
           ||||||||||||||||||||||||||||||||||||||||||||      ||     |||
Sbjct: 106 gtaccattcatggcaaatatgtcactgagtgtgggtttccctgaggaccatt-----gcc 52

                                                       
Query: 294 ccc------cccccccagtagggcagtgggagagacattgagca 331
           | |      ||     ||||||||||||||||||||||||||||
Sbjct: 51  ctcttagttcc-----agtagggcagtgggagagacattgagca 13


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 734
Length adjustment: 9
Effective length of query: 325
Effective length of database: 725
Effective search space:   235625
Effective search space used:   235625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)