BAC Information

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BAC

Clone NameMSMg01-278B12
Chromosome12 (Build37)
Map Location 78,083,973 - 78,202,662
singlet/doubletdoublet
Overlap geneLOC100041765
Upstream geneSyne2, Esr2, LOC665957, Tex21, Mthfd1, Akap5, Zbtb25, Zbtb1, Hspa2, Gm70, LOC100041694, Plekhg3, Spnb1, Churc1, Gpx2, Rab15, Fntb, Max
Downstream geneLOC100041772, Fut8, LOC230765, LOC666659
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-278B12.T7 (MSMg01no278_b12.b1)MSMg01-278B12.TJ (MSMg01no278_b12.g1)
ACCAG415812AG415813
length695701
length of high quality
(start - end)
290 (43 - 332)287 (58 - 344)
definitionCHROMAT_FILE: MSMg01no278_b12.b1 PHD_FILE: MSMg01no278_b12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:18:20 2005CHROMAT_FILE: MSMg01no278_b12.g1 PHD_FILE: MSMg01no278_b12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:18:20 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,083,973 - 78,084,262)(78,202,377 - 78,202,662)
sequence
CACTCACTATTCGGAGAGGATCCGCGGAATTCAGTAATCCCCGCTCCTAT
GAGCTGGTCAGACTTCTTATCATCTCCTAGGCTTCTGGCAACGCCTACTG
ACCAATGCATTGGATAGGGACACCACCCAGTGGAAAGTGGACGTTTCCAG
CCCTTTTACGATCCAGCCAAAGTCCAGGTATTGAAGAGAGGCAGGGAAAG
CGCTGTTACATTGTGTCTGGGCTGATCATCCACCTTCAGATGATTTTTCT
CTCTGGAAAGCAGAACACTCAACAATGGCATCCTGGTCTACTCCTGTCTT
CCCCCTCCTCCAGTCCTCTCACACACCTGTTTATGGAATCGCTCGNATCC
CGGNAACCAAGAGGNCCCGGCATACCCTGTGAGAGATGCTGACATTCCAA
GATAAACTACGGCTTCCTCAGGGAAACAGACGCGCTTTCATCCCATGCCT
TTGTTTTATAGACTGGCTTATGACTAGAAATAACCCGCTTATCGTAAATC
TCTCTTGGGGGATTTACAGAGGTGTCGCCTGTTCTATTTGCTTGGCGTTT
TTCACACATTTGCTTAACTTCATCCATTATTCAGGGAGAACATTTTGTAT
TCTAAGTCTTAATTACACAAGAAGGAAATATTGCCCAACAGACACAGCCC
TTAATGTTTTAAGGTTCCCTTAATTTGGAAGGTAGATCCCCGTTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTCTGTAGAAGTAAAATGTCCAAGTGCAGTTTCTATAGTAATT
ATTATTACAACAACAATAATGTTGGCTAGTATTTAGTGAACTTTTAAAAT
GCAATCCATGCCATTATTAAATGAATTCCTCATAGAAAGTCCTAAGGAGA
AGGAACTATCACTAGCTATATTACATAGTCAAAAAACAAACAAGCAAAAA
ACAAACAAAATCCCACAGGCTCCTGGGGTGAGGGACTGCCATATTCTAAG
TGCCTGTGCCCTTCCAAAATTCACACACTGAAGTCCTACCTGATTTATTT
CCCCCCCCCCCCCCACTTTGGGAGGATAACTCAGTCATGGTAGTGACTAT
GTAAGAGACTCCACACAGCCCCCTTGCTCCCATTCTGTGAGAACACAGCA
AGAAAGCTCTATTTAGGAACAGGAAAATGGGTTTTCACCAAACACCCAAG
CTACTTGATGCCTTGAGCTTGGATGCTGATTTTCTGGTGTTTGAAAAATA
CCTGGACTACTGTCCAAGATCACCGTACTCGTTATTGACACTAGTGCAGG
ACTTATTTCCTCTACTGCAAGAGCCCTTAGCTTCTCGGCTATTGCTACCT
TATAGCCTCATCATCCACCCTCCAGTTTGTAACCTACCCAGAATCACTTC
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no278_b12.b1 MSMg01no278_b12.b1 CHROMAT_FILE:
MSMg01no278_b12.b1 PHD_FILE: MSMg01no278_b12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:18:20 2005
         (290 letters)



>mm_chr12_78083773_78084462
          Length = 690

 Score =  530 bits (274), Expect = e-155
 Identities = 286/290 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gctcctatgagctggtcagacttcttatcatctcctaggcttctggcaacgcctactgac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 gctcctatgagctggtcagacttcttatcatctcctaggcttctggcaacgcctaatgac 260

                                                                       
Query: 61  caatgcattggatagggacaccacccagtggaaagtggacgtttccagcccttttacgat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caatgcattggatagggacaccacccagtggaaagtggacgtttccagcccttttacgat 320

                                                                       
Query: 121 ccagccaaagtccaggtattgaagagaggcagggaaagcgctgttacattgtgtctgggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccagccaaagtccaggtattgaagagaggcagggaaagcgctgttacattgtgtctgggc 380

                                                                       
Query: 181 tgatcatccaccttcagatgatttttctctctggaaagcagaacactcaacaatggcatc 240
           |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 381 tgatcacccaccttcagatgatttttctctctggaaagcagaacactcaacaacggcatc 440

                                                             
Query: 241 ctggtctactcctgtcttccccctcctccagtcctctcacacacctgttt 290
           |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 441 ctggtctactcctgccttccccctcctccagtcctctcacacacctgttt 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no278_b12.g1 MSMg01no278_b12.g1 CHROMAT_FILE:
MSMg01no278_b12.g1 PHD_FILE: MSMg01no278_b12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:18:20 2005
         (287 letters)



>mm_chr12_78202177_78202863
          Length = 687

 Score =  538 bits (278), Expect = e-157
 Identities = 284/286 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttctgtagaagtaaaatgtccaagtgcagtttctatagtaattattattacaacaacaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ttctgtagaagtaaaatgtccaagtgcagtttctatagtaattattattacaacaacaat 427

                                                                       
Query: 61  aatgttggctagtatttagtgaacttttaaaatgcaatccatgccattattaaatgaatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 aatgttggctagtatttagtgaacttttaaaatgcaatccatgccattattaaatgaatt 367

                                                                       
Query: 121 cctcatagaaagtcctaaggagaaggaactatcactagctatattacatagtcaaaaaac 180
           |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||
Sbjct: 366 cctcatagaaagtcctaaggagaaggaggtatcactagctatattacatagtcaaaaaac 307

                                                                       
Query: 181 aaacaagcaaaaaacaaacaaaatcccacaggctcctggggtgagggactgccatattct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 aaacaagcaaaaaacaaacaaaatcccacaggctcctggggtgagggactgccatattct 247

                                                         
Query: 241 aagtgcctgtgcccttccaaaattcacacactgaagtcctacctga 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 aagtgcctgtgcccttccaaaattcacacactgaagtcctacctga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)