BAC Information

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BAC

Clone NameMSMg01-278K10
Chromosome12 (Build37)
Map Location 54,122,916 - 54,123,193
singlet/doubletsinglet
Overlap geneAkap6
Upstream geneGpr33, LOC100039627, Nubpl, Arhgap5
Downstream geneNpas3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-278K10.T7 (MSMg01no278_k10.b1)MSMg01-278K10.TJ (MSMg01no278_k10.g1)
ACCAG416224AG416225
length781799
length of high quality
(start - end)
91 (254 - 344)279 (152 - 430)
definitionCHROMAT_FILE: MSMg01no278_k10.b1 PHD_FILE: MSMg01no278_k10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:02 2005CHROMAT_FILE: MSMg01no278_k10.g1 PHD_FILE: MSMg01no278_k10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTTTTTTTTTTTTTTTTNNTTTTTTTCCNNGATTNCCGAATTTTTTT
CTCCCCATCAATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTCATTTTCGAAATACTGAATGGCTGAGAAGAGCCTGAA
AAAATGTTCAGTATCCTTAATCTTCCCCCAAATACAAATCAAAACAACCC
TGAGATTCCATTTCACACCAGTCAAAATGGCTAATATCAAAAATTCAGGT
TAACAGCAGATGCTGGTAGGATGTGGAGAATGAGGAACACTCCTCCATTG
TTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAATCTGGTAGT
TCCTCAGAAAATTGGACATAGTACTATTGTATGATCCTACAATACCTCTC
TTGGGCATATATCCATATTTTCCCACCGCCCCCCACCGACACATGCTCCA
CTATGTTCATATCAGCCTTATTTATAATAGCCAAAAACTGTAAAGAACCC
AGATGTTCTTCAACAGATGAACTGATACCGAACATGTGTTACATTTACAC
TTTGGAGTACTACTTAGCTATTAAAAAGAATGAATTTATGAAATTCCTAG
GCAAATTGACTGACCTGAAGTACATCATCCTGATTGAGTTAACCCCCTCT
TAAAACTTTTCACATGTATTGCACTCACCGATCATTGGATATCAGTCCTA
TTAATTTATAATACCCCACATTCCAGACCACATGTAACATTTTTTTTTCG
TAAAAACGACTAATCAATTTGTGGTACTTTT
TTTTTTTTTNTNNTNNNNNNNNNNNNNNNNNNNNNNTTTNNTGNTTTGTN
TTTTCCCCCCCCTCTNCNCCCCCTCTCTATGATANXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XAGCTGATCAAACTGCTGTGTGCTTCCAGGGGATAAAGAGCTGCTAACTG
GGTCTGTGGTGCCACTGGGAGGAAGTGAAGTCATGAAATGAGACCTTTCC
ATATACCACACTGTAGCTGACAGGCTACTTAAAATGTATTACCTCTTAAA
ATTAATCATATCCTCTGAAAACACGTATCTTTGAAAATAATGTGAAGAAG
GTTTTAATGACTTCCATGCCTACAAGGTTTCCTTTGATAGTGTTCTCATA
GAATTGTAGACATTTCTGAGAGTTTCCTAATTTTCATTAATTCCCTTNAC
CAATCCTCCCCGATTTGCTACAGAGTTATCTATTTGATTTCACTAAATTA
AGAAAAAAAAATCTACTGTTTTCCCGTAAATCTACAAATCAACACATGAC
CAGCATTATGAGGCATACATGCCTCCTTAAAAACCTTTCTTGTTTTCTGT
ATTAGGACTTTGTGATATATATTTTTTTGAAACATTGGTGCTAACTCTAC
ACCAAAGAATCAAATTATGTTACCATAGCATTTTACAAAATTATTTGTGA
AATAGATTTCTCAAACGCAATATCAAACCTAAATATCCTTAGCTGCCAAG
AACAGTGTGCCTTGAACATCTGCAGAGTTCCTTTGTAAGGTTTGTCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no278_k10.g1 MSMg01no278_k10.g1 CHROMAT_FILE:
MSMg01no278_k10.g1 PHD_FILE: MSMg01no278_k10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:19:03 2005
         (279 letters)



>mm_chr12_54122716_54123393
          Length = 678

 Score =  509 bits (263), Expect = e-148
 Identities = 275/279 (98%), Gaps = 1/279 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agctgatcaaactgctgtgtgcttccaggggataaagagctgctaactgggtctgtggtg 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agctgatcaaactggtgtgtgcttccaggggataaagagctgctaactgggtctgtggtg 260

                                                                       
Query: 61  ccactgggaggaagtgaagtcatgaaatgagacctttccatataccacactgtagctgac 120
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccac-gggaggaagtgaagtcatgaaatgagacctttccatataccacactgtagctgac 319

                                                                       
Query: 121 aggctacttaaaatgtattacctcttaaaattaatcatatcctctgaaaacacgtatctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 aggctacttaaaatgtattacctcttaaaattaatcatatcctctgaaaacacgtatctt 379

                                                                       
Query: 181 tgaaaataatgtgaagaaggttttaatgacttccatgcctacaaggtttcctttgatagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tgaaaataatgtgaagaaggttttaatgacttccatgcctacaaggtttcctttgatagt 439

                                                  
Query: 241 gttctcatagaattgtagacatttctgagagtttcctaa 279
           |||| |||||||||||||||||||||||| |||||||||
Sbjct: 440 gttcacatagaattgtagacatttctgagtgtttcctaa 478


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 678
Length adjustment: 9
Effective length of query: 270
Effective length of database: 669
Effective search space:   180630
Effective search space used:   180630
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)