Query= MSMg01no278_k11.b1 MSMg01no278_k11.b1 CHROMAT_FILE:
MSMg01no278_k11.b1 PHD_FILE: MSMg01no278_k11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:19:03 2005
(232 letters)
>mm_chr12_54911608_54912239
Length = 632
Score = 389 bits (201), Expect = e-113
Identities = 224/237 (94%), Gaps = 10/237 (4%)
Strand = Plus / Minus
Query: 1 agtgtctgctatggacccttctaaccagcaggacagcaggtcaggagaaaactttgcctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 agtgtctgctatggacccttctaaccagcaggacagcaggtcaggagaaaactttgcctc 373
Query: 61 tagcactgtatccagggcaaggtaagttctagaacttgttggataggcattaatagtctc 120
||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct: 372 tagcactgtatccagggcaaggtaagttctagaactttttggctaggcattaatagtctc 313
Query: 121 ctgtggttattgtgtagagttgctactttctatcagatcctattggatctttaagtctcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 ctgtggttattgtgtagagttgctactttctatcagatcctattggatctttaagtctcc 253
Query: 181 cttggg-----ttttttattccagagtcccttaaagtagaagttctcaatcttcctt 232
|||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct: 252 cttgggccaaa-----tattccagagtccctttaagtagaagttctcaatcttcctt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 632
Length adjustment: 9
Effective length of query: 223
Effective length of database: 623
Effective search space: 138929
Effective search space used: 138929
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no278_k11.g1 MSMg01no278_k11.g1 CHROMAT_FILE:
MSMg01no278_k11.g1 PHD_FILE: MSMg01no278_k11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:19:03 2005
(269 letters)
>mm_chr12_54739829_54740496
Length = 668
Score = 482 bits (249), Expect = e-140
Identities = 264/269 (98%), Gaps = 1/269 (0%)
Strand = Plus / Plus
Query: 1 ggaatacttctttttttttctttttttttattagatatttttccatttacatttcagatg 60
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 ggaatacttctttttttttctttttttttattagatatttttttatttacatttcagatg 260
Query: 61 taatcatcactcttcaattgtagtttatacactgccactgagacatgtctctctcctttt 120
||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||
Sbjct: 261 taatcatcactcttcaattgtagtttatacacttccactgagaaatgtctctctc-tttt 319
Query: 121 tctcctgcggccacaatggcacttggcacttagcactcatgcgatcttcaaagtaccttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tctcctgcggccacaatggcacttggcacttagcactcatgcgatcttcaaagtaccttt 379
Query: 181 tagagacttcctctcatgaataagagtaggcttcctgtgtctacagcgcacaaggagcat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tagagacttcctctcatgaataagagtaggcttcctgtgtctacagcgcacaaggagcat 439
Query: 241 gtgctgttggttggtgttgcagccatgcg 269
|||||||||||||||||||||||||||||
Sbjct: 440 gtgctgttggttggtgttgcagccatgcg 468
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 269
Length of database: 668
Length adjustment: 9
Effective length of query: 260
Effective length of database: 659
Effective search space: 171340
Effective search space used: 171340
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
