Query= MSMg01no278_p13.b1 MSMg01no278_p13.b1 CHROMAT_FILE:
MSMg01no278_p13.b1 PHD_FILE: MSMg01no278_p13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:19:27 2005
(668 letters)
>mm_chr12_44059508_44060577
Length = 1070
Score = 1133 bits (586), Expect = 0.0
Identities = 645/668 (96%), Gaps = 9/668 (1%)
Strand = Plus / Plus
Query: 5 gaattcttgtttgctcaaagcctgaattatgggtaactatttgttgaaggaaagtttcta 64
|||||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttattggctcaaatcctgaattatgggtaactatttgttgaaggaaagtttcta 264
Query: 65 aatttagactaaaaatctataaacta----ctcttataaaaaatttccagtcatgcaaat 120
||||||||||||| ||||||||| | ||||||||||||||||||| ||||||||||
Sbjct: 265 aatttagactaaatatctataaa--aaaaactcttataaaaaatttccattcatgcaaat 322
Query: 121 ataaaacgaaagtatgcatgtgaggcttatagcatataaaaatgtaaaagtgacttttat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ataaaacgaaagtatgcatgtgaggcttatagcatataaaaatgtaaaagtgacttttat 382
Query: 181 tgacctcatgtaattgtctcagaagcttattgctgatgaataagctcaccctgtctagtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tgacctcatgtaattgtctcagaagcttattgctgatgaataagctcaccctgtctagtt 442
Query: 241 ctttctgaactctggctggctgttttaactcagctgtctggttcaaactcctatcaaagc 300
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 443 ctttctgaactctggttggctgttttaactcagctgtctggctcaaactcctatcaaagc 502
Query: 301 ttacttttttttttccgttcctttttctctcagcttctcactgaattgctatgatagcct 360
|||| ||||||| | |||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ttacctttttttct--gttc-tttttctctcagcttctcactgaattgctatgatagcct 559
Query: 361 cagatgtaggctcttaatccctctgggtggaataccatgtagaacacatcttcaaggtaa 420
|||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 560 cagacataggctcttaatccctttgggtggaataccatgtagaacacatctttaaggtaa 619
Query: 421 aattagtttgtagaaggaatcagccatgtttgaaaatgatattaaattgagaggcagaaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 620 aattagtttgtagaaggaatcagccatgtttgaaaatgatattaaattgagagacagaaa 679
Query: 481 aagtgacaaatcagaaaaagatttgacagaaagaatcaaagatcagaagaacactgtagg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 aagtgacaaatcagaaaaagatttgacagaaagaatcaaagatcagaagaacactgtagg 739
Query: 541 aaggagaagctatataagagcagagcacagaatttagttcagtcaattgggagtcagcgc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 aaggagaagctatataagagcagagcacagaatttagttcagtcaattgggagtcagcgc 799
Query: 601 agtgagtgccatgcagtgttgagttgaagttgagttcatctgtcagttattgcagttgaa 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 agtgagtgccatgcagtgttgagttgaagttgagttcatctgtcagttattgcagttgaa 859
Query: 661 gccagaga 668
||||||||
Sbjct: 860 gccagaga 867
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1070
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1060
Effective search space: 697480
Effective search space used: 697480
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no278_p13.g1 MSMg01no278_p13.g1 CHROMAT_FILE:
MSMg01no278_p13.g1 PHD_FILE: MSMg01no278_p13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:19:27 2005
(309 letters)
>mm_chr12_44248449_44249157
Length = 709
Score = 543 bits (281), Expect = e-159
Identities = 300/313 (95%), Gaps = 12/313 (3%)
Strand = Plus / Minus
Query: 9 caccgttctcttaaaagcaggttaaaccaacaggctgaatagtcagtaaaatagaaagct 68
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 709 caccgttctcttaaaagcaggttaaaccaacaggctgagtagtcagtaaaatagaaagct 650
Query: 69 gtcttaatatctccaagtgtgatattagttctggctctgagatcaaacaaaagttccagt 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 gtcttaatatctccaagtgtgatattagttctggctctgagatcaaacaaaagttccagt 590
Query: 129 tcattagattataaggggtaatttcatcatcttgtattgtcacttt-t-----------t 176
|||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 589 tcattagattataaggggtaatttcatcatcttgtattgtcactttgtgtgtgtgtgtgt 530
Query: 177 gtgtgtgtgtgtgtgtgtgtactttctcccttgttacctgacctgatttttgtctcttta 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 gtgtgtgtgtgtgtgtgtgtactttctcccttgttacctgacctgatttttgtctcttta 470
Query: 237 tcatgtatattccatgatataatatccctctgtgctattatcccttgttggtagtttggt 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 tcatgtatattccatgatataatatccctctgtgctattatcccttgttggtagtttggt 410
Query: 297 agcattctctgag 309
|||||||||||||
Sbjct: 409 agcattctctgag 397
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 709
Length adjustment: 9
Effective length of query: 300
Effective length of database: 700
Effective search space: 210000
Effective search space used: 210000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
