BAC Information

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BAC

Clone NameMSMg01-279G23
Chromosome12 (Build37)
Map Location 14,893,073 - 15,042,777
singlet/doubletdoublet
Overlap geneLOC668492
Upstream geneAW125753, LOC100043256, Map1lc3-ps7
Downstream geneLOC100042426, LOC217409, Trib2, LOC100043268, EG432636, LOC100043273
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-279G23.T7 (MSMg01no279_g23.b1)MSMg01-279G23.TJ (MSMg01no279_g23.g1)
ACCAG416800AG416801
length763771
length of high quality
(start - end)		703 (45 - 747)324 (389 - 712)
definitionCHROMAT_FILE: MSMg01no279_g23.b1 PHD_FILE: MSMg01no279_g23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:01 2005CHROMAT_FILE: MSMg01no279_g23.g1 PHD_FILE: MSMg01no279_g23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:01 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,042,079 - 15,042,777)(14,893,073 - 14,893,396)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTGTTTAGCTCTTCACCCCATGTTTTGATTGGGTTGTTTGGTTTC
TTGGAGGTTAGCTTCTTGACCCGCAATACTCACTTGTGTTAATAGTTATA
TAAGATAGCACACAGAATAAATCAGCATAAAAGGATTTTGTTTTATATAT
GTCATATGTCAAGTATGCCTCCAGACAAAAGCACACATGTTCTTATTTGG
TTGTTCCAGAAAAAAATTACAGAATAGACATTTACATATGCAGACACAGA
GAGGTAGAACGACGGAGAATGTGAACAATCTGTGAAACCTGCTTTCCTGT
TCCACATTCCTCAGGACTTGCTTGGTTTGTCAAGTCTGAGAATCAGCCTC
TAGTTTTGTAACAATCTGCATTTAACTCAAATACATTTAGAACACTGGAT
ATTTCACAAGCCAGATAAAATCATCAGTTTCATTGCATATGCCAGCAAGA
TTTTGCTGACAATACCCTGATATAGCTATCTCTTGTGAGGATATGCCAGT
GCCTGGCAAATACAGAAGTAGATGCTCATAGTCATCTATTAGATGGAACA
CAGGGCTCCTAAAGAAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGG
TCGGCAGCCCTATAGGAGGAACAACAATATGAGCTAACCAGTACCCCACA
GATCTGTGTCTCTAGTTGCATATGTAGCAGAGCACGGCCTAGTCGGCCAT
TAATGGGAGGAGA

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATCTATAACTTGAGTCTGAGAGCA
AATTGATTTACTACTCTCTAATCTTTATATTCACTTGAAAAACATTCCAC
TTTATTAATAATAAAAGCCATGTATAATTTCACATTTAGAAAAAAAACAT
GTTGCTGTAAAAATGTTTTCTAAAATGACTATGTTTTAAATTACTGTGTC
AGAGATTCAGCATAATTTAAACTGTGAAATGCAGCAAAAGAATAGTCAGC
TTAAGTCTTCCATGCCCTTCGCAGCATGGGCTACCAGCTAAGTAAGTCAC
AAGCTATGAGATTCATTTGCCTTACTCCCGCTCCTCACAAAGAAGCTCAA
TTTCAACATTCCCAAAACAAAAGGCAGAGCCAGCCATGTTGCTGGTGTGC
ATCTTCTTACATCAATGCATTTTGTCTCCATAAGATATGGATTTTAATAC
ATTGTAAAATGTACAATTTGTATTTATTTTAATGAATTAGTAGTAGTTGT
TTTCTTTGTGGAAAGGTGTAGTGTTTATGTGCATCTATGTGCATTCATTT
TTGTGGGTGTATCTGTTTAAAAGTATATGCAGGTCTATGTGCACAGCATT
ATGGGTAAATCAAAGGATAAGCTTCAGTGTTGGTTTTCAGGATCCATCTA
TCTTTTGTATGAGGTAAGATTTTTTTTTCATTTTTTTTCTCCTTAATTTA
TTTTTTCATTTTACAGTTTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no279_g23.b1 MSMg01no279_g23.b1 CHROMAT_FILE:
MSMg01no279_g23.b1 PHD_FILE: MSMg01no279_g23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:01 2005
         (703 letters)



>mm_chr12_15042067_15043169
          Length = 1103

 Score = 1290 bits (667), Expect = 0.0
 Identities = 691/699 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttgtttagctcttcaccccatgttttgattgggttgtttggtttcttggaggt 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 gaattctttgtttagatcttcaccccatgttttgattgggttgtttggtttcttggaggt 652

                                                                       
Query: 65  tagcttcttgacccgcaatactcacttgtgttaatagttatataagatagcacacagaat 124
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 tagcttcttgaccagcaatactcacttgtgttaatagttatataagatagcacacagaat 592

                                                                       
Query: 125 aaatcagcataaaaggattttgttttatatatgtcatatgtcaagtatgcctccagacaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 aaatcagcataaaaggattttgttttatatatgtcatatgtcaagtatgcctccagacaa 532

                                                                       
Query: 185 aagcacacatgttcttatttggttgttccagaaaaaaattacagaatagacatttacata 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 aagcacacatgttcttatttggttgttccagaaaaaaattacagaatagacatttacata 472

                                                                       
Query: 245 tgcagacacagagaggtagaacgacggagaatgtgaacaatctgtgaaacctgctttcct 304
            ||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 471 cgcagacacagagacgtagaatgaaggagaatgtgaacaatctgtgaaacctgctttcct 412

                                                                       
Query: 305 gttccacattcctcaggacttgcttggtttgtcaagtctgagaatcagcctctagttttg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 gttccacattcctcaggacttgcttggtttgtcaagtctgagaatcagcctctagttttg 352

                                                                       
Query: 365 taacaatctgcatttaactcaaatacatttagaacactggatatttcacaagccagataa 424
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 351 taacaatctgcatttaactcaaatacatttagaacattggatatttcacaagccagataa 292

                                                                       
Query: 425 aatcatcagtttcattgcatatgccagcaagattttgctgacaataccctgatatagcta 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 aatcatcagtttcattgcatatgccagcaagattttgctgacaataccctgatatagcta 232

                                                                       
Query: 485 tctcttgtgaggatatgccagtgcctggcaaatacagaagtagatgctcatagtcatcta 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 tctcttgtgaggatatgccagtgcctggcaaatacagaagtagatgctcatagtcatcta 172

                                                                       
Query: 545 ttagatggaacacagggctcctaaagaaggagctagagaaagtacccaaggagctaaagg 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 ttagatggaacacagggctcctaaagaaggagctagagaaagtacccaaggagctaaagg 112

                                                                       
Query: 605 ggtcggcagccctataggaggaacaacaatatgagctaaccagtaccccacagatctgtg 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111 ggtcggcagccctataggaggaacaacaatatgagctaaccagtaccccacagatctgtg 52

                                                  
Query: 665 tctctagttgcatatgtagcagagcacggcctagtcggc 703
           ||||||||||||||||||||||||||| |||||||||||
Sbjct: 51  tctctagttgcatatgtagcagagcacagcctagtcggc 13


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 703
Length of database: 1103
Length adjustment: 10
Effective length of query: 693
Effective length of database: 1093
Effective search space:   757449
Effective search space used:   757449
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no279_g23.g1 MSMg01no279_g23.g1 CHROMAT_FILE:
MSMg01no279_g23.g1 PHD_FILE: MSMg01no279_g23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:01 2005
         (324 letters)



>mm_chr12_14892873_14893596
          Length = 724

 Score =  580 bits (300), Expect = e-170
 Identities = 318/324 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaagaagctcaatttcaacattcccaaaacaaaaggcagagccagccatgttgctggtgt 60
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaagaggctcaatttcaacattcccaaaacaaaaggcagagccagccatgttgctggtgt 260

                                                                       
Query: 61  gcatcttcttacatcaatgcattttgtctccataagatatggattttaatacattgtaaa 120
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 261 gcatcttcttacatcaatgcattttttctccataagatatggattttaatacattgtaaa 320

                                                                       
Query: 121 atgtacaatttgtatttattttaatgaattagtagtagttgttttctttgtggaaaggtg 180
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgtacattttgtatttattttaatgaattagtagtagttgttttctttgtggaaaggtg 380

                                                                       
Query: 181 tagtgtttatgtgcatctatgtgcattcatttttgtgggtgtatctgtttaaaagtatat 240
           | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 381 tggtgtttatgtgcatctatgtgcattcatttttgtgggtgtatctgtttaaaggtatat 440

                                                                       
Query: 241 gcaggtctatgtgcacagcattatgggtaaatcaaaggataagcttcagtgttggttttc 300
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 441 gcaggtctatgtgcacagcattatgggtagatcaaaggataagcttcagtgttggttttc 500

                                   
Query: 301 aggatccatctatcttttgtatga 324
           ||||||||||||||||||||||||
Sbjct: 501 aggatccatctatcttttgtatga 524


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 724
Length adjustment: 9
Effective length of query: 315
Effective length of database: 715
Effective search space:   225225
Effective search space used:   225225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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