BAC Information

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BAC

Clone NameMSMg01-279J13
Chromosome12 (Build37)
Map Location 99,382,310 - 99,532,091
singlet/doubletdoublet
Overlap geneGalc, Gpr65
Upstream geneLOC382626, LOC100039743, LOC667732, LOC628351, LOC100039770, LOC667746
Downstream geneKcnk10, Spata7, Ptpn21, Zc3h14, Eml5, LOC100039845, Ttc8, EG667779, Ches1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-279J13.T7 (MSMg01no279_j13.b1)MSMg01-279J13.TJ (MSMg01no279_j13.g1)
ACCAG416915AG416916
length750762
length of high quality
(start - end)
321 (36 - 356)292 (75 - 366)
definitionCHROMAT_FILE: MSMg01no279_j13.b1 PHD_FILE: MSMg01no279_j13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:14 2005CHROMAT_FILE: MSMg01no279_j13.g1 PHD_FILE: MSMg01no279_j13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:14 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,531,775 - 99,532,091)(99,382,310 - 99,382,519)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTGAC
CTCATGACTTATATGCAAGCCCTGTTGTAAGCTGTGGTCAGGCTGAAAAC
AATTGGTATCAGGACCGGCTCCATAAATCAAGCCTTCTGGGTGAGGTTTT
GAAGCTGGTTTTCTGAGTAACACAATAGTAGGACCCAAGCACTTCGCATG
CCATAGCAGGTGGGATGATGGTCATTCTGGGCCTGCAATGACATTCATTA
GCATGAAGTTACTAAGTCTTTCACTTGAGATTAATTGAAGTGATGTTCAG
ACAGAAGATTGGATCATTTGACCGGTAATTGAGCATTTTGATTTATTTTG
TAGTAGTTGAAAGGAGACTCATTTTCTGCAAGGTATACTGAAAAGTAAGT
CCAGAATATAGCTTTAGGTAGAAAAGCTCTCCACGGCTTTAGTAGGACTC
CTCAGCTACAGTTACTACTTATGATGCTAAGATAGTGGGATTCTGTGATT
TACGTTGAGTATGTCTGAGAAGCTTATTGGAGCAATTGAGAATCTTAATG
CCCTCTGAATATTCCAGGATGACTGAAGCAAACTCCTCCCCTCTGGGAGC
AGCCTCCCCTTCCCCAGAGATAGATAAATGGGATCATCTTAGGCACTATT
CACTATAGTATTAATCCACATTAAGATCATCTTTCTCCACTCCAAAGCTT
TCCCTAGGTTTTGTCACAGCCAGTGAAGAGGTACAACCTCTGTTTACTGG

CGATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTTCCCAAATCAATAAGTAGTCACTCACTAAAGTTCA
GCCAGTGTTCTTTGTTCTGTTTTGTCCCGCTTTGCTTCTTTGCTTGTATG
TTATAATAAGCAGAGCAGAACAAAGCACCCACCCCATTTGATCATGACTG
AGCGATATTTACTCACAAATGCATACATGGGGGATTGGAGTAAAAAATTT
AATGGGAAAAGCACCAAGAATACAGTACTAACAAGAATACAGTACTAACA
AGAATACAGTACTAACAAGAATACAGTACTAACAAGAATACAGTACTAAC
AAGAATACAGTACTAACTTTTTTTCTGTACCCCCCCCACCCACAGTACTA
ACAAGAATACAGTACTAACAAGAATACAGTACTAACAAGAATACAGTACT
AACAAGAATACAGTACTAACAAGAATACAGTACTAACAAGAATACAGTAC
TAACAAGAATACAGTACTAACAAGAATACAGTACTAACAAGAATACAGTA
CTAACAAGAATACAGTACTAACAAGAATACAGTACTAACAAGAATACAGT
ACTAACAAGAATACAGTACTAACAAGAATACAGTACTAACAAGATTACAG
TATTAACAAGAATACAGTACTAACAAGAATACAGTACTAACAAGAATACC
GTATTAACAAGAATACAGTACTAACAAGAATACCGTACTAAACAGAATAC
AGTACTAACAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no279_j13.b1 MSMg01no279_j13.b1 CHROMAT_FILE:
MSMg01no279_j13.b1 PHD_FILE: MSMg01no279_j13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:14 2005
         (321 letters)



>mm_chr12_99531571_99532291
          Length = 721

 Score =  567 bits (293), Expect = e-166
 Identities = 311/317 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctgacctcatgacttatatgcaagccctgttgtaagctgtggtcaggctgaaaa 64
           ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 gaattcctgacctcaggaattatatgcaagccctgttgtaagctgtggtcaggctgaaaa 462

                                                                       
Query: 65  caattggtatcaggaccggctccataaatcaagccttctgggtgaggttttgaagctggt 124
           |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 461 caattggtatcaggactggctccataaatcaagccttctgggtgaggttttcaagctggt 402

                                                                       
Query: 125 tttctgagtaacacaatagtaggacccaagcacttcgcatgccatagcaggtgggatgat 184
           |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 401 tttctgagtaacacaatagtaggacccaagcacttcacatcccatagcaggtgggatgat 342

                                                                       
Query: 185 ggtcattctgggcctgcaatgacattcattagcatgaagttactaagtctttcacttgag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 ggtcattctgggcctgcaatgacattcattagcatgaagttactaagtctttcacttgag 282

                                                                       
Query: 245 attaattgaagtgatgttcagacagaagattggatcatttgaccggtaattgagcatttt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 attaattgaagtgatgttcagacagaagattggatcatttgaccggtaattgagcatttt 222

                            
Query: 305 gatttattttgtagtag 321
           |||||||||||||||||
Sbjct: 221 gatttattttgtagtag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no279_j13.g1 MSMg01no279_j13.g1 CHROMAT_FILE:
MSMg01no279_j13.g1 PHD_FILE: MSMg01no279_j13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:14 2005
         (292 letters)



>mm_chr12_99382110_99382801
          Length = 692

 Score =  360 bits (186), Expect = e-104
 Identities = 204/210 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   aataagtagtcactcactaaagttcagccagtgttctttgttctgttttgtcccgctttg 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||
Sbjct: 201 aataagtagtcactcactaaagttcagccagtgttctttgttctgttttgttttgctttg 260

                                                                       
Query: 61  cttctttgcttgtatgttataataagcagagcagaacaaagcacccaccccatttgatca 120
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 261 cttctttgcttgtatgttataataagcagagcagaacaaagcacccaccctatttgatca 320

                                                                       
Query: 121 tgactgagcgatatttactcacaaatgcatacatgggggattggagtaaaaaatttaatg 180
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 tgactgagcgatatttactcacaaatgcatacatggggggttggagtaaaaaatttaatg 380

                                         
Query: 181 ggaaaagcaccaagaatacagtactaacaa 210
           ||||||||||||||||||||||| ||||||
Sbjct: 381 ggaaaagcaccaagaatacagtattaacaa 410


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)