BAC Information

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BAC

Clone NameMSMg01-279J18
Chromosome12 (Build37)
Map Location 60,164,193 - 60,164,512
singlet/doubletsinglet
Overlap genenone
Upstream geneSstr1, Clec14a, LOC100040183, Sec23a, Sip1, Trappc6b
Downstream genePnn, EG544872, Mia2, Mgea6, Fbxo33, LOC665628, LOC238199, LOC665639, LOC665644, EG622488
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-279J18.T7 (MSMg01no279_j18.b1)MSMg01-279J18.TJ (MSMg01no279_j18.g1)
ACCAG416925AG416926
length762776
length of high quality
(start - end)		324 (46 - 369)291 (77 - 367)
definitionCHROMAT_FILE: MSMg01no279_j18.b1 PHD_FILE: MSMg01no279_j18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:15 2005CHROMAT_FILE: MSMg01no279_j18.g1 PHD_FILE: MSMg01no279_j18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTGACCCCTCTACCTCCAACTCCTAAATTCTAGAATTACAGATGT
GCACCACTGCGTTGTCCTTTACTTTTTTGTGGACATGGGGCATCCAACAT
TCGAAGCAAATATGTTGATGTTGCTGAAACAGATTAGTCTGGTTGTGTTT
GGCTGGTTGGTTGGTTTTGGTTCTGAGGTCCATCTTACATTGGTGTTATA
CTCAGGGCTTCTACTGTTCCTTCTGCTTTGGACTCTTAGTACTACAAGGG
TCACTACTCTGCCAGCTATGTTATTAGTTAGTTCTTTTCTCAGTAATTCA
TGAAATAGGTATTTCTTCCTATTCTTTCCCTGCCTCCCCTACTAACATTA
GTTTTCTCAAATTGGTTACAATAACCTAATGTTACATTATTTCAAAGGAA
CTTTTAAGTGACAGTTCTATAATTATAATAGTAAGTGTCATGGTTAATAT
CAGTTTGACAGAATCTAAAATCACTCAGTGGACAAACCTCTGGATTTGTC
TGTGGGTTTCCAGATTGGGAAAACTGAGGTGGGGAAGATCCACTCTAAAT
ATGGCTTACACCATTAAGGGCTGCTGTTCTAAATTTGATAAAAAAATAAT
GTGAACTGAGCACTTGTTTCTATCTGCTTCCCGACTGTGTCTGCCTAGGA
ACAGCCACCTTAAGATCTTACATTATGTCTTCACCACCATGGTGTATTTG
TGGTTTCTACCG

CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGCTCACCTGTGATGATGTATTGT
TGAAGGTTGTTTTCCAGTACTGAAATAAAATGGAGTTCTGTACTTTGTGA
GCACTTTCTTTTCTTTTTTTTTTTAATTGTTTTTAGATTTATTTATTTAT
TATATGTAAGTACACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGAGTC
AGATCTCGTTACGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGA
ACTCCGGACCTTCGGAAGAGCAGTCGGATGCTCTTACCCACTGAGCCATC
TCACCAGCCCTTGTGAGTTCTTTCTTACACCCCCCCCCGCAAACCAGATA
GATGGAAGCTATTTATCAAAGGCTAGCTGACCAAAATTGTTAACATACTC
GCTGACCGCTCTTGTTCCCTTCTAAATTATTAAATAAATAAACTATTTTG
GCACCTGTAGGTCATTATGTGACCCGTTTCTCCAAAATAAGGAGATTAAA
TTCTTTTGACTTATTGTATTCCTTGGAAAAAATGTTAATAACTAAACTGT
AATTTTTATTAAAATACCACCTATGAAAATGAGAGTTTCAGATTTCTGAG
TTATTGCCAAAATAAAACATACTTCTTATGTACATTAATTTGAACTTTCT
AAGTTTAACACATCTAGTATTTTGGAAAAATACTCCAGATGGGTATTTAA
ATGGTCTATTCAGTCTTATGTGAAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no279_j18.b1 MSMg01no279_j18.b1 CHROMAT_FILE:
MSMg01no279_j18.b1 PHD_FILE: MSMg01no279_j18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:15 2005
         (324 letters)



>mm_chr12_60163989_60164712
          Length = 724

 Score =  580 bits (300), Expect = e-170
 Identities = 315/320 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctgacccctctacctccaactcctaaattctagaattacagatgtgcaccactg 64
           ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct: 205 gaattcctgacccctctacgtccaactcctaaattctagaattacagatgtacaccactg 264

                                                                       
Query: 65  cgttgtcctttacttttttgtggacatggggcatccaacattcgaagcaaatatgttgat 124
           ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 265 cgttgtcctttacttttgtgtggacatggggcatccaacatgcgaagcaaatatgttgat 324

                                                                       
Query: 125 gttgctgaaacagattagtctggttgtgtttggctggttggttggttttggttctgaggt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gttgctgaaacagattagtctggttgtgtttggctggttggttggttttggttctgaggt 384

                                                                       
Query: 185 ccatcttacattggtgttatactcagggcttctactgttccttctgctttggactcttag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ccatcttacattggtgttatactcagggcttctactgttccttctgctttggactcttag 444

                                                                       
Query: 245 tactacaagggtcactactctgccagctatgttattagttagttcttttctcagtaattc 304
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 445 tactacaagggtcactactctgccagctatgtgattagttagttcttttctcagtaattc 504

                               
Query: 305 atgaaataggtatttcttcc 324
           ||||||||||||||||||||
Sbjct: 505 atgaaataggtatttcttcc 524


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 724
Length adjustment: 9
Effective length of query: 315
Effective length of database: 715
Effective search space:   225225
Effective search space used:   225225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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