BAC Information

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BAC

Clone NameMSMg01-279O01
Chromosome12 (Build37)
Map Location 80,253,614 - 80,253,953
singlet/doubletsinglet
Overlap geneArg2
Upstream geneEG626215, Gphn, 4921509E07Rik, Mpp5, Atp6v1d, LOC100041878, Eif2s1, Plek2, 6330442E10Rik, Plekhh1, Pigh, LOC666722
Downstream geneVti1b, Rdh11, Rdh12, Zfyve26, Rad51l1, LOC100041968, LOC435309, LOC100041674, LOC666754, Zfp36l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-279O01.T7 (MSMg01no279_o01.b1)MSMg01-279O01.TJ (MSMg01no279_o01.g1)
ACCAG417117AG417118
length769743
length of high quality
(start - end)
718 (45 - 762)518 (77 - 594)
definitionCHROMAT_FILE: MSMg01no279_o01.b1 PHD_FILE: MSMg01no279_o01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:35 2005CHROMAT_FILE: MSMg01no279_o01.g1 PHD_FILE: MSMg01no279_o01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACCTCATTCATGACCTTAGTGATCTTCATCAGCCATTTCTCTAACA
GTATCCTTTTAAAGTTACCAACAAGCTCCAGTAGAAGGCTTATCTCTGAT
TTAAAAAGAAAAAAAAGATACTGTCTTCAAGATGGAGTCTGGGGAGATAG
CTCAACAGTAGAGTGCTTGTCTAAGCATGAGGACCTGAGCTCAAACCATA
GAACCTTTATACAATTCCAGTGTTAGGGAGGCTGAACTCAGAGCTCACTG
TCAAGTGGACTTGCCCAGTCATTGAGTTCCATACAAGTAAGAGATCCAAG
AAACGGGATGACTGGCACCTGAGAAATGACAGTTGAGGTTGACTGTATTT
AAAAAAAAAAAATCTTTTCAAGAAATGTTCTTGGGCTGGTGAGATGGCTC
AACAGATAAGAGCACCCGACTGTTCTTCTGAAGGTCCTGAGTTCAATTCC
CAGCAACCACATGGTGGCTCACAACCATCCCTAACAAGATCTGGTGCCCT
CTTCTGGAGTGTCTGAAGACAGCTACAGTGTACTTACATATAATAAATAA
ATAAATCTTTAAAAAAAAAAAAAAAAAAAAAAAGAAATGTTCTTAAAATC
TGGACATGGTGTTGCATGTCTGTACGCTCAGCACCTGGAAGGTAAGAAGG
ATTCGGAGTCCCAAGTCATCCCCTCCTCAACTACATGAGTTTCAAGTCAG
TCTTAACTACATGAGACCC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCA
GAGAAGCACCTGAAAAAATGTTCACCATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAA
ATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATC
CAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAG
AAGGACACATGCTCCACTATGATCATAGCAGCCTTATTTATAATAGCCAG
AAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAA
TGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAA
TTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAG
TGAGGTAACACATTCCCAAAGGAACTCACACAAAATGTACTCACTGAAAA
GTGGATATTAACCCCCATCCCTAGGATCCCAAGAATAAAGAAAACAATTT
GGCTAACACCCTGAAACTCCAGAAGAATGGAAGACGGGAATGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no279_o01.b1 MSMg01no279_o01.b1 CHROMAT_FILE:
MSMg01no279_o01.b1 PHD_FILE: MSMg01no279_o01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:35 2005
         (718 letters)



>mm_chr12_80253614_80254731
          Length = 1118

 Score =  584 bits (302), Expect = e-171
 Identities = 333/348 (95%), Gaps = 8/348 (2%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacctcattcatgaccttagtgatcttcatcagccatttctctaacagtatcctt 64
           |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 340 gaattcacctcagtcatgaccttagtgaccttcatcagccatttctctaacagtatcctt 281

                                                                       
Query: 65  ttaaagttaccaacaagctccagtagaaggcttatctctgatttaaaaagaaaaaaaaga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 ttaaagttaccaacaagctccagtagaaggcttatctctgatttaaaaagaaaaaaaaga 221

                                                                       
Query: 125 tactgtcttcaagatggagtctggggagatagctcaacagtagagtgcttgtctaagcat 184
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 220 tactgtcttcaagatggagtctggggagatagctcaacagtcgagtgcttgtctaagcat 161

                                                                       
Query: 185 gaggacctgagctcaaaccatagaacctttatacaattccagtgttagggaggctgaact 244
           |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct: 160 gaggacctgagctcaaaccatagaacctttatgcaactccagtgttagggaggctgaact 101

                                                                       
Query: 245 cagagctcactgtcaagtggacttgcccagtcattgagttccatacaagtaagagatcca 304
           |||||||||||||| || |||||||||||||||||||||||||||||||||||||||   
Sbjct: 100 cagagctcactgtctagcggacttgcccagtcattgagttccatacaagtaagagat--- 44

                                                           
Query: 305 agaaacgggatgactggcacctgagaaatgacagttgaggttgactgt 352
                |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43  -----cgggatgactggcacctgagaaatgacagttgaggttgactgt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 718
Length of database: 1118
Length adjustment: 10
Effective length of query: 708
Effective length of database: 1108
Effective search space:   784464
Effective search space used:   784464
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)