Query= MSMg01no280_h01.b1 MSMg01no280_h01.b1 CHROMAT_FILE:
MSMg01no280_h01.b1 PHD_FILE: MSMg01no280_h01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:17 2005
(579 letters)
>mm_chr12_102030661_102031639
Length = 979
Score = 1054 bits (545), Expect = 0.0
Identities = 572/583 (98%), Gaps = 4/583 (0%)
Strand = Plus / Plus
Query: 1 tatttctaagctgcagagatcactccattggtttgctgtgcaagaatgaacccgacggag 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 197 tatttctaagctgcagagatcactccattggtttgctgtgcaagaatgaacctgacggag 256
Query: 61 tttaagctgcagaatgcatacaaaacactgagtgtgagtaatcccagcaccgaggaggtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 tttaagctgcagaatgcatacaaaacactgagtgtgagtaatcccagcaccgaggaggtg 316
Query: 121 gagacagacagcactctgtctccaccaggagccagcctggctacttgctgagtgccaggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 gagacagacagcactctgtctccaccaggagccagcctggctacttgctgagtgccaggc 376
Query: 181 caaggagactcaatagaaaggtggctggtccttaagagatgacactcaagattttcccct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 caaggagactcaatagaaaggtggctggtccttaagagatgacactcaagattttcccct 436
Query: 241 tcctgtacacatgtccctgcatacagatgggattaaacacattcagctcacactctcaca 300
|||||||||||||||||||||||||||||||| |||||||||||||||||||| | ||||
Sbjct: 437 tcctgtacacatgtccctgcatacagatgggactaaacacattcagctcacacacacaca 496
Query: 301 c----tgctacgactttgaaatatcccagaacatatgtgtcaacttagaaaaaagtgaca 356
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 cacactgctacgactttgaaatatcccagaacatatgtgtcaacttagaaaaaagtgaca 556
Query: 357 tatttgtaatactgagtctttctgttgtgagcagaactttgtctccatttattcttcttt 416
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct: 557 tatttgtaatactgagtctttctgtcgtgagcagaactttctctccatttattcttcttt 616
Query: 417 aaggtgtttagttaagttctccatattgagatttcatatgttttcttaggtttatgcctg 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 aaggtgtttagttaagttctccatattgagatttcatatgttttcttaggtttatgcctg 676
Query: 477 tgtgtgtaatattgtacttcggtggccccactcttcatctctcacccccttctctgaccc 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 tgtgtgtaatattgtacttcggtggccccactcttcatctctcacccccttctctgaccc 736
Query: 537 acacacctttctgtttcttctattccttgtcttttctttctgc 579
||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 737 acacacctttctgtttcttctattcctcgtcttttctttctgc 779
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 979
Length adjustment: 10
Effective length of query: 569
Effective length of database: 969
Effective search space: 551361
Effective search space used: 551361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no280_h01.g1 MSMg01no280_h01.g1 CHROMAT_FILE:
MSMg01no280_h01.g1 PHD_FILE: MSMg01no280_h01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:17 2005
(290 letters)
>mm_chr12_102175818_102176508
Length = 691
Score = 528 bits (273), Expect = e-154
Identities = 285/289 (98%), Gaps = 1/289 (0%)
Strand = Plus / Minus
Query: 1 cacactgagttcccagaacgcagcgctcagtgcacagtacacggtgctgcccagccagca 60
|||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct: 489 cacactgagttcccagaacgcagcgctcagtgcacagtacacggtgttgcagagccagca 430
Query: 61 ggctgccaaggaggccgagcacgagggtctgcagcagcagcaggagcagctggcagccgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 ggctgccaaggaggccgagcacgagggtctgcagcagcagcaggagcagctggcagccgt 370
Query: 121 ctatgaagccctgctgcaggaccacaagcacctgggcaccctgtacgagtgccagtcctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 ctatgaagccctgctgcaggaccacaagcacctgggcaccctgtacgagtgccagtcctc 310
Query: 181 agagtatgaggccctcatccgccagcacagctgcctgaagacgctgcacaggaacctgga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 agagtatgaggccctcatccgccagcacagctgcctgaagacgctgcacaggaacctgga 250
Query: 241 gctggagcacaaggagctgggggagaggtgagaggt-ggggggggcctg 288
|||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 249 gctggagcacaaggagctgggggagaggtgagaggtgggggggggcctg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 691
Length adjustment: 9
Effective length of query: 281
Effective length of database: 682
Effective search space: 191642
Effective search space used: 191642
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
