BAC Information

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BAC

Clone NameMSMg01-288A07
Chromosome12 (Build37)
Map Location 55,366,630 - 55,553,207
singlet/doubletdoublet
Overlap geneEG665239, EG665251, LOC665256
Upstream geneNpas3, Egln3
Downstream geneLOC621363, 1110002B05Rik, Eapp, LOC673582, LOC100039735, LOC100039764, Snx6, Cfl2, Baz1a, LOC100039804, 2700097O09Rik, LOC665144, EG665137, Srp54, 1700047I17Rik, LOC100039815, LOC665155, LOC100039830, Ppp2r3c, 1110008L16Rik, LOC673593, LOC665366, Psma6, LOC100039871
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-288A07.T7 (MSMg01no288_a07.b1)MSMg01-288A07.TJ (MSMg01no288_a07.g1)
ACCAG417957AG417958
length742745
length of high quality
(start - end)		373 (46 - 418)294 (76 - 369)
definitionCHROMAT_FILE: MSMg01no288_a07.b1 PHD_FILE: MSMg01no288_a07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:22:00 2005CHROMAT_FILE: MSMg01no288_a07.g1 PHD_FILE: MSMg01no288_a07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:22:00 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,552,839 - 55,553,207)(55,366,630 - 55,366,918)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAAAAATTGTTTGCATGTTGAGCCTTCTGGGCTGTGAGTGCTGAGA
GCGCGTCCCTTGGTTGGTAGTTAGAATGAACAGCTTAGGAGTGCTCTTCC
AACTCTGTGGGAGACGCACAAAGAGGACCTTAATGGTGCTGGTTTCGGAT
GCTCAACGAAGAATGGGCCTGGCTACTGGTGTTGGCCTCTGTAATATAGA
AGGTTACAGAAGACAAAGGCATTGCCACTTCTATATATGTTAGATGTTTG
CTTCTAGTAACTTAGAAGCTAAGCCATTCCTGTTGTGGAAAAACCTCCAG
TGTCAAACTTATTTATAAATGGCTCCTGTTGCCTGAAAATTAACCGAAAG
AAAAAGCAATTTATGATAACCCCCCCCAGCGATTCTTTTTTTTCCCCCTT
TTTGCACACTTTTGCCCTCTGGGAGGTAGGAAGTCTGGCCAGAGAGCACA
TCTCACACTGGTCACCTCCTGGCCCTGCCTAGTCTTTCCTGACTGATATC
CACACAGATACATTTGTAGCTGGAGCCTGGGTCTTAATGTTCTCTTCAGC
GGCTGATCATTTGTGCTTCCGTGGATTACTTGGCTCTCTTCCTACCCTAC
GCTTTCTTGTTTTGCAATTCTTACAAATATATGTAATCTGCTTTTCTTAT
CCTGAACAAAGAAGGGTTTTTGCTCGTCCGTTGGTCTCGCCT

CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAATCCCAAGCCGCACATTCTATTC
CATTGCCCAGCCCTGAGCACCATCCCATCTTCAGAGTCCCTTTTCACTAA
CACTGGGTTTGTAATGTTGGCCTGTATTTGTCCCCGTTTCTAATCACTGC
TGGGGTGGGAGAGAAGGGCCGAAGCATGAATGGCCCCACCGTGAAACAGT
TACAGTAAAAGAAAACACAAACTGACCTTCAGAAATATTTTGAATTGAAA
TTCTTTGGAAATGAAGACTATAAATATAAGCTTGGCGAATGCTCAAAACC
CATAGTTTTATTTGTTTTTTATGACCACCCCCCCCTCTCAAGATGAAGCG
TCTATTATTTGCAAAGGTGCCCCCACCTGACTAAAGATTGGAAACACTTG
CCAGGAAACAAGAGAAGTAAAGAAAATATAGCCAGTGGTAGGCAGAGGGT
GTGTGTCAGGGAGAGGCTATGTCTGTAAGTGACTTTTGGAAAACTGTTTC
CCCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTTT
TCTTCCCCCTTTTCCCTCTATTTTTTTCCTTTCCTTGCCCCTTACTTTCC
CGCCCTTTACCGCCCCTTTTCACCCTTTCCCTACCCCCATTATATTTTCC
CTCCTCCTTTCTACCCTTTATCCCCTTTTTCTTCCTCCCCTCTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no288_a07.b1 MSMg01no288_a07.b1 CHROMAT_FILE:
MSMg01no288_a07.b1 PHD_FILE: MSMg01no288_a07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:00 2005
         (373 letters)



>mm_chr12_55552635_55553407
          Length = 773

 Score =  652 bits (337), Expect = 0.0
 Identities = 361/369 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaaaaattgtttgcatgttgagccttctgggctgtgagtgctgagagcgcgtccc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 573 gaattcaaaaattgtttgcatgttgagccttctgggctgtgagtgctgagagcacgtccc 514

                                                                       
Query: 65  ttggttggtagttagaatgaacagcttaggagtgctcttccaactctgtgggagacgcac 124
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct: 513 ttggttggtagttagaatgaacagcttgggagtgctcttccaactctgtgggagaagcac 454

                                                                       
Query: 125 aaagaggaccttaatggtgctggtttcggatgctcaacgaagaatgggcctggctactgg 184
           |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 453 aaagaggaccttaatggtgctggttttggatgctcaacgaagaatggacctggctactgg 394

                                                                       
Query: 185 tgttggcctctgtaatatagaaggttacagaagacaaaggcattgccacttctatatatg 244
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 393 tgttggcctctgtaatatagaaggttacagaagacaaaggcactgccacttctatatatg 334

                                                                       
Query: 245 ttagatgtttgcttctagtaacttagaagctaagccattcctgttgtggaaaaacctcca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 ttagatgtttgcttctagtaacttagaagctaagccattcctgttgtggaaaaacctcca 274

                                                                       
Query: 305 gtgtcaaacttatttataaatggctcctgttgcctgaaaattaaccgaaagaaaaagcaa 364
           ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 273 gtgtcaaccttatttataaatggctcctgttgcctgaaaattaactgaaagaaaaagcaa 214

                    
Query: 365 tttatgata 373
           |||||||||
Sbjct: 213 tttatgata 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 773
Length adjustment: 9
Effective length of query: 364
Effective length of database: 764
Effective search space:   278096
Effective search space used:   278096
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no288_a07.g1 MSMg01no288_a07.g1 CHROMAT_FILE:
MSMg01no288_a07.g1 PHD_FILE: MSMg01no288_a07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:00 2005
         (294 letters)



>mm_chr12_55366427_55367120
          Length = 694

 Score =  528 bits (273), Expect = e-154
 Identities = 285/289 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   tcccaagccgcacattctattccattgcccagccctgagcaccatcccatcttcagagtc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 tcccaagccgcacattctattccattgcccagccctgagcaccatcccatcttcagagtc 263

                                                                       
Query: 64  ccttttcactaacactgggtttgtaatgttggcctgtatttgtccccgtttctaatcact 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ccttttcactaacactgggtttgtaatgttggcctgtatttgtccccgtttctaatcact 323

                                                                       
Query: 124 gctggggtgggagagaagggccgaagcatgaatggccccaccgtgaaacagttacagtaa 183
           ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct: 324 gctggggtgggagagaagggcagaagcatgaatggccccaccatgaaacagttacagtaa 383

                                                                       
Query: 184 aagaaaacacaaactgaccttcagaaatattttgaattgaaattctttggaaatgaagac 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aagaaaacacaaactgaccttcagaaatattttgaattgaaattctttggaaatgaagac 443

                                                            
Query: 244 tataaatataagcttggcgaatgctcaaaacccatagttttatttgttt 292
           |||||||||||||||||||||  ||||||||||||||||||||||||||
Sbjct: 444 tataaatataagcttggcgaacactcaaaacccatagttttatttgttt 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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