Query= MSMg01no288_n14.b1 MSMg01no288_n14.b1 CHROMAT_FILE:
MSMg01no288_n14.b1 PHD_FILE: MSMg01no288_n14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:23:02 2005
(320 letters)
>mm_chr12_5973249_5973968
Length = 720
Score = 497 bits (257), Expect = e-145
Identities = 290/303 (95%), Gaps = 6/303 (1%)
Strand = Plus / Plus
Query: 21 actggtagtggtgaatttatattttgtttcttttcttacacgtaaaa-cctcaatcataa 79
||||||||||||||||||||||||||||||||||||| || |||||| ||||||||||||
Sbjct: 221 actggtagtggtgaatttatattttgtttcttttcttccatgtaaaaacctcaatcataa 280
Query: 80 ctgtgtatgtcaaattatgatcagttaggccccagaattgataatcatattt--tatttt 137
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct: 281 ctgtgtatgtcaaattatgatcagttaggtcccagaattgataatcatattaagtatttt 340
Query: 138 aatatgaaaattgcctttcttaatagaaaaatatttatattaatcctccttcagcactat 197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 aatatgaaaattgcctttcttaatagaaaaatatttatattaatcctccttcagcactat 400
Query: 198 aggaaatgatgttgtttcttcaatgttattgaatgtgtttaatttcttcacctccatgat 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 aggaaatgatgttgtttcttcaatgttattgaatgtgtttaatttcttcacctccatgat 460
Query: 258 cctagtaatgaaacataaacattagtctggttgcatccgcatttatgacttgtgcccttt 317
|||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct: 461 cctagtaaccaaacataaaca---gtctggttgcatcagcatttatgacttgtgcccttt 517
Query: 318 ctg 320
|||
Sbjct: 518 ctg 520
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space: 221121
Effective search space used: 221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no288_n14.g1 MSMg01no288_n14.g1 CHROMAT_FILE:
MSMg01no288_n14.g1 PHD_FILE: MSMg01no288_n14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:23:02 2005
(305 letters)
>mm_chr12_6132888_6133592
Length = 705
Score = 524 bits (271), Expect = e-153
Identities = 291/305 (95%), Gaps = 12/305 (3%)
Strand = Plus / Minus
Query: 1 agtgcttggagctggtgagatggctcaggggtgagcagacacaaggaccaccacacacat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 agtgcttggagctggtgagatggctcaggggtgagcagacacaaggaccaccacacac-- 556
Query: 61 aaataaataaataaataaataaataaataaataaataaataaataaataaataaataaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 ----------ataaataaataaataaataaataaataaataaataaataaataaataaat 506
Query: 121 gttttaaaaattaaagtactcggtagtgcttgaatatgcctcattttcctgccaatttaa 180
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gttttaaaaattaaagtactcagtagtgcttgaatatgcctcattttcctgccaatttaa 446
Query: 181 taaataaggtgaaaatggacatgaaataaaagaagaaaaacattgttaaggggagtaagg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 taaataaggtgaaaatggacatgaaataaaagaagaaaaacattgttaaggggagtaagg 386
Query: 241 taaaaaggctactggaagcacacagttttattcagtgcaaaagctctgctctctgttctc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 385 taaaaaggctactggaagcacacagttttattcagtgcaaaagctctgctctctgctctc 326
Query: 301 tgttc 305
|||||
Sbjct: 325 tgttc 321
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 705
Length adjustment: 9
Effective length of query: 296
Effective length of database: 696
Effective search space: 206016
Effective search space used: 206016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
