BAC Information

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BAC

Clone NameMSMg01-289A02
Chromosome12 (Build37)
Map Location 4,633,666 - 4,634,261
singlet/doubletsinglet
Overlap geneItsn2
Upstream geneDtnb, Dnmt3a, LOC668289, Pomc1, C030014M07Rik, C330021A05Rik, Adcy3, Cenpo, 2410017P09Rik, Ncoa1, LOC100041995, LOC100042005, LOC100042014
Downstream gene4930417G10Rik, A830093I24Rik, Pfn4, EG626534, 0610009D07Rik, Fkbp1b, BC068281, Gm1964, Ubxd4, Atad2b, LOC668332, Klhl29, 2810032G03Rik, LOC435292
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-289A02.T7 (MSMg01no289_a02.b1)MSMg01-289A02.TJ (MSMg01no289_a02.g1)
ACCAG418677AG418678
length730727
length of high quality
(start - end)
321 (50 - 370)596 (132 - 727)
definitionCHROMAT_FILE: MSMg01no289_a02.b1 PHD_FILE: MSMg01no289_a02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:23:14 2005CHROMAT_FILE: MSMg01no289_a02.g1 PHD_FILE: MSMg01no289_a02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:23:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTGTCAGATTACCATTCAGGGCCCCATCAAATCTGAGGGAAG
CAGTGATGGAAGACACAATCTGTTTAATAAGGCCGTTAAGGTTGGTGTAG
GTTGGGCGCTCAATGTCGAGGTTTCTACGACAGATGTCATAGATGGCCTC
ATTGTCTACCATGAAGGCACAATCAGAGTGCTCCAGGGTGGTGTGGGTGG
TGAGGATGGAATTGTAGGGCTCAACCACAGCAGTGGAAACCTGGGGGGCT
GGGTAAATGGAGAACTCCAGCTTGGACTTCTTTCCGTAATCCACAGAGAG
CCGCTCCATCAGCAGGGATGTTAAGCCAGAGCCACTTCCCCCGCCAAAGC
TGTGGAAAACCAAGAAGCCCTGGAGACCTGTGCACTGGTCAGCCAGCTTG
CGAATCCTGTCCAGGACAAGGTCAATGATCTCCTTGCCAATGGTGTAGTG
GTCACGGGCATAGTTATTGGCAGCATCCTCCTTGCCTGTGATGAGCTGCT
CAGGGTGGAAGAGCTGGCGGTAGGTGCCAGTGCGAACTTCATCGATGACT
GTGGGTTCCAGGTCTACAAACACTGCCCTGGGCACATGCTTGCCAGCTTC
TGTCTCACTGAAGAAGGTGTTGAAGGAATCTTCTCCTCCCCCCATGGTCT
TGTCACTTGGCATCTGGCCATCAGGCTGGA
CACCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGACAGAATGTAAGAGTTAA
CATTGAAAAATATTTCTGTCTAATTTGACCAAAATTTCAAATTCCTTTCT
ATTATTTTGTTGTAGCTTTATTGATTTTCATCATTTGTAAACCCCAAAGT
GCTATCCCTTTCCTTGCTCTTACTTTAAAAATATTCTAGAGGGGTAGCAG
AGATTCTTAGTGGCTAGTGGCAGAGGGCCTGGGTTCAGTTCCCAGCACCC
ACATGGCAGCTAACAACCATCTATAACTCTATTTCCAGGGTATCTTTCAC
CCTCTTCTGACCTCCGTGGGTATCAGGCACACACATGTTGTACATATACA
TGTAAACAAAACACTCATAAACATAAAGAATTTTTAAAAATCTCTTAAAA
TGTTCTAGAATATCTGGGATCATGTTTTTTTAAAATATATTACAGTAAAT
AAGATCTTCTACTCCATTTTTTTTCTTATAGAACATCTGTGTGCTTGACA
GAATGCTAGTAGCAAACATATTTTTGATTATTTGAACAAGTGAATAAATT
AAATTTACAAATTATGAGCCTATATAAAATATACACACTATGTAGCCTTA
GATGTCCTAAAACTCACTGTGTAGACCAGGCTGGCCTCAAGCTTGGAACA
ATCCTTTTCTCTCTGCCTCCATGATGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no289_a02.g1 MSMg01no289_a02.g1 CHROMAT_FILE:
MSMg01no289_a02.g1 PHD_FILE: MSMg01no289_a02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:23:14 2005
         (596 letters)



>mm_chr12_4633466_4634460
          Length = 995

 Score = 1038 bits (537), Expect = 0.0
 Identities = 582/597 (97%), Gaps = 2/597 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaatttcaaattcctttctattattttgttgtagctttattgattttcatcatttgtaaa 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 aaatttcaaattcctttctattattttgttgtagctttattggttttcatcatttgtaaa 260

                                                                       
Query: 61  ccccaaagtgctatccctttccttgctcttactttaaaaatattctagaggggtagcaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccccaaagtgctatccctttccttgctcttactttaaaaatattctagaggggtagcaga 320

                                                                       
Query: 121 gattcttagtggctagtggcagagggcctgggttcagttcccagcacccacatggcagct 180
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gattctt-gtggctagtggcagagggcctgggttcagttcccagcacccacatggcagct 379

                                                                       
Query: 181 aacaaccatctataactctatttccagggtatctttcaccctcttctgacctccgtgggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aacaaccatctataactctatttccagggtatctttcaccctcttctgacctccgtgggt 439

                                                                       
Query: 241 atcaggcacacacatgttgtacatatacatgtaaacaaaacactcataaacataaagaat 300
           | ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 440 accaggcacgcacatgttgtacctatacatgtaaacaaaacactcataaacataaagaat 499

                                                                       
Query: 301 ttttaaaaatctcttaaaatgttctagaatatctgggatcatgtttttttaaaatatatt 360
           ||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||
Sbjct: 500 tttaaaaaatctcttaaaatgttctagaatatctggggtcatgttttttaaaaatgtatt 559

                                                                       
Query: 361 acagtaaataagatcttctactccattttttttc-ttatagaacatctgtgtgcttgaca 419
           |||||||||||||||||||||||||||  ||||| |||||||||||||||||||||||||
Sbjct: 560 acagtaaataagatcttctactccattccttttccttatagaacatctgtgtgcttgaca 619

                                                                       
Query: 420 gaatgctagtagcaaacatatttttgattatttgaacaagtgaataaattaaatttacaa 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 620 gaatgctagtagcaaacatatttttgattatttgaacaagtgaataaattaaatttagaa 679

                                                                       
Query: 480 attatgagcctatataaaatatacacactatgtagccttagatgtcctaaaactcactgt 539
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 680 attatgagcctatataaaatatacacactatgtaaccttagatgtcctaaaactcactgt 739

                                                                    
Query: 540 gtagaccaggctggcctcaagcttggaacaatccttttctctctgcctccatgatgg 596
           |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 740 gtagaccaggctggcctcaagcttggaacaatccttttctctctgcctccctgatgg 796


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 995
Length adjustment: 10
Effective length of query: 586
Effective length of database: 985
Effective search space:   577210
Effective search space used:   577210
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)