BAC Information

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BAC

Clone NameMSMg01-289D14
Chromosome12 (Build37)
Map Location 69,772,007 - 69,772,240
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040681
Downstream geneLOC100040696, LOC665967, LOC665973, Rps29, Ppil5, Rpl36al, Mgat2, 1110034A24Rik, 9330151L19Rik, Pole2, Klhdc1, Klhdc2, Sdccag1, Arf6, LOC100040856, LOC100040862, Gm71, Sos2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-289D14.T7 (MSMg01no289_d14.b1)MSMg01-289D14.TJ (MSMg01no289_d14.g1)
ACCAG418835AG418836
length718704
length of high quality
(start - end)
234 (128 - 361)285 (73 - 357)
definitionCHROMAT_FILE: MSMg01no289_d14.b1 PHD_FILE: MSMg01no289_d14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:23:29 2005CHROMAT_FILE: MSMg01no289_d14.g1 PHD_FILE: MSMg01no289_d14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:23:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTTGTTTCCTTCTGACTGACAGAATGTGTGAGTCAAGTCGGGGT
AACTGAACAGACGTCTCATTAGGACAGTGTGCTTACAGAAACACAAGCTC
ATGCTTCCGAGGCAGAAGCTCTTCTCTGGGCACCTTTGCCGGCTCTTTTC
AGCCACAACACCTAACTAGTTTCTCACATCCTGCTCTCACACCTGTACCT
GTTATTTACTTATGCATGAACCTCCCACTCCAGGCCAATTGGCAACCCTA
CCTATAACTGAAGCCCATGTATTTAAAGGAATCCTCAGCTCTTACCCCAA
ATTAACACTGATTATTGTTTTCTGCCCCCACGCGCATGTTTTTTTGTTAA
ACAAAACAACATATCTCCCCCCACCGACTAAAAAACATTCAAGTTACAGG
CAAAGTCTACCTATAGTATAGAAAATAATCCTCTAACCAACCACTGAAAC
TCAGATTTCCACTCCACAAAAAACCAACCTCTCTTAAAATAGAGTAACAT
TCAGAATTAAATGGTTATACTGGGGATGTGACAAGGTGGGCCTGAAACAC
AACAACTACCATGAGAAAACCACTGCCCTCCAGCCTCCAGCCTCTCATCT
CAAAAGATGAGAATAATAAGCTACATCTGCTTCACAGAGTGCAGAGGTTC
AGGGAAAGCACTTAGCAG
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGTGTGGGGCGCGGGGGGGGGTGCAGGA
GAATTGCTAATCTTGTTTATGCCTATTTCTCTGAGAACAGCTAATATTGT
TTTGGTAGCTGCAAGCTTAATCATTTTGACCGCCAAAACTATGTTTTTAC
ATTTGTTTAGTCAGCCAGCTTCCTTATCTGGCTCTGTATTTTGCCTGCTA
GTTCAGTTTGGAAAGTGCTTTTCGAAGGGGGAAGGTACTGGGTGGTCTTG
AATTCACTTTGGATATTACTTAATTACCCAAGGAGCTGAAGGGGCCTGCA
GCCCTATTGGAGTACATCTCTATGCANTACCAGTACCCCAAGAGCTCCCT
GGGACTAAACCACCCCCCAAAGAANCACNAAAAGGGACTCATGACTCCAG
CTGTTTATGTAGCAGAGGATGGCCTAATTGTTCATCAGTGGGAGGAGAGG
CCCTTTGTCCTATGAAGGCTCTATGCCCCAGTGTAGGGGAATGCCAGGGC
TAGGAAGTGGGAATGGGTGGGTTGGTGAGCAGGGGAAGGTGCTTCTTCTT
TTTTCTCTCCTTATTCATGATATACTTCCGACTTTTATCCAAATATTTAT
TTTCTTTTTTACATTCTTCTTTTCTTTTTCCCAATTAATTCCCTTTATTC
TCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no289_d14.b1 MSMg01no289_d14.b1 CHROMAT_FILE:
MSMg01no289_d14.b1 PHD_FILE: MSMg01no289_d14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:23:29 2005
         (234 letters)



>mm_chr12_69771807_69772440
          Length = 634

 Score =  437 bits (226), Expect = e-127
 Identities = 232/234 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtgcttacagaaacacaagctcatgcttccgaggcagaagctcttctctgggcaccttt 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 201 tgtgcttacagaaacacaagctcatgcttccgaggcaggagctcttctctgggcaccttt 260

                                                                       
Query: 61  gccggctcttttcagccacaacacctaactagtttctcacatcctgctctcacacctgta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gccggctcttttcagccacaacacctaactagtttctcacatcctgctctcacacctgta 320

                                                                       
Query: 121 cctgttatttacttatgcatgaacctcccactccaggccaattggcaaccctacctataa 180
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctgttatttacttatgcgtgaacctcccactccaggccaattggcaaccctacctataa 380

                                                                 
Query: 181 ctgaagcccatgtatttaaaggaatcctcagctcttaccccaaattaacactga 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgaagcccatgtatttaaaggaatcctcagctcttaccccaaattaacactga 434


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)