NAGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCACAGCCAACTAAGGGAGATTCTTTAAAAGTGGGTCTAGTA
TATTAGGGATGCTCAGATACTCAGACAAATTTTTGACCTTGCCAAGAGAG
AAGGTGCGTAAAGTTAGTATTACACAAACAAGTTGAACATGGTTGTTGAT
ACAGGCAGTATGAAAAGCTGATGCTTTTTTGTGTTGATAGATATTAAAAT
CAACTGATATAGAGGATGTTTTTGAGAAGGGCACAACAAGTTGATAGTGA
ACCAATGATTTTCAAGTAATGTTCCTTTTCAATAATGATTTATTTGAGCC
AAGATTACTGTTATAAACCTTAACATCATTTATTTAGCATTTTTTAAGAA
AACTGAAATTTTGTATAGCACCCCAAAACGAAGATGTTGACTTAAAAAAT
TGCTATTATATATGGATGATTTTTCTTATAAGTAAAGAAAAAATGATCTA
GCACCAAATTTTACAGATTGCAAATCTAAATTAAAAGTTCTGAAAGATTC
AATTTAAAGGTTTGGGGACATACAGGCTGCTTTCAGATTATGTGGACAAG
GCTAAATAAAAATTATCACGTTAATCATGGGTTGCATTTGGAATAAGTAG
AGTGAAGTCAGGTGTTGGAAAGGTGTTTGAAAGGTAGACCTGGGAGGAGA
TTTGGAGAGAATTGTAAGGTA

NTCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATGGAGACATCCTGTTTATA
GCTGTGTTTTTAAGGTTCTCTTTCTCCCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCACTGTGGGTCTCTGTATTTTTCCATATGCTGCAGGAGG
AATCTTCTCTAATGATGGTTGAATCTATGGGCATAATGGAATACAACTAG
GAGACATTTTATCACTATTTTTTTAAAGACTACTAGTATCGGGCTTTTCC
CTGAGTCTCTGGGCTAGTCTCTGGTTCTTGGTCATTCAAGCACTGTCAGG
TATTGGTTCTGTCTTGTGGTGTAGCTCTTAAGTCAATTAAGACATTGGTT
GGTTACTCCTGCAAAGTTTGCGCCACTACTGCCCTAGCATACTTTTACAG
GCAGAGCACCAGTTTAGATAAAGGACATGGGGCTGGGTTGATATTGATGT
TCTTCATTGGTAGCCTGCAGACTTTCCATACCAAAGACAGAATGGAGGGG
TGAGGGATGGCTCAGCAGTTAAGAGCACTGAGTGACCCACAAAGCAGCTC
ACAACTGACTGTAACTCTACATGCAGGGAATCTGGCACTATTACATAACC
ACGCATACAGGACTATGTTTAACTTCAAAAAATGATAACAACTAATTCTA
GTTAACCCTTCATATATTAA

Query= MSMg01no289_g07.b1 MSMg01no289_g07.b1 CHROMAT_FILE:
MSMg01no289_g07.b1 PHD_FILE: MSMg01no289_g07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:23:41 2005
         (672 letters)



>mm_chr12_49486242_49487314
          Length = 1073

 Score = 1205 bits (623), Expect = 0.0
 Identities = 657/675 (97%), Gaps = 13/675 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccacagccaactaagggagattctttaaaagtgggtctagtatattagggatgct 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccacagccaactaagggagattctttaaaagtgggtctagtatattagggatgct 264

                                                                       
Query: 65  cagatactcagacaaatttttgaccttgccaagagagaaggtgcgtaaagttagtattac 124
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cagatactcagaaaaatttttgaccttgccaagagagaaggtgcgtaaagttagtattac 324

                                                                       
Query: 125 acaaacaagttgaacatggttgttgatacaggcagtatgaaaagctgatgcttttttgtg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acaaacaagttgaacatggttgttgatacaggcagtatgaaaagctgatgcttttttgtg 384

                                                                       
Query: 185 ttgatagatattaaaatcaactgatatagaggatgtttttgagaagggcacaacaagttg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttgatagatattaaaatcaactgatatagaggatgtttttgagaagggcacaacaagttg 444

                                                                       
Query: 245 atagtgaaccaatgattttcaagtaatgttccttttcaataatgatttatttgagccaag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 445 atagtgaaccaatgattttcaagtaatgttccttttcaataatgatttatttgagccaat 504

                                                                       
Query: 305 attactgttataaaccttaacatcatttatttagcattttttaagaaaactgaaattttg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 attactgttataaaccttaacatcatttatttagcattttttaagaaaactgaaattttg 564

                                                                       
Query: 365 tata------gcaccccaaaacgaagatgttgacttaaaaaa-ttgctattatatatgga 417
           ||||      |      ||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 565 tataataaggg------aaaacgaagatgttgacttaaaaaaattgctattatatatgga 618

                                                                       
Query: 418 tgatttttcttataagtaaagaaaaaatgatctagcaccaaattttacagattgcaaatc 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 tgatttttcttataagtaaagaaaaaatgatctagcaccaaattttacagattgcaaatc 678

                                                                       
Query: 478 taaattaaaagttctgaaagattcaatttaaaggtttggggacatacaggctgctttcag 537
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 taaattaaaagttctgaaagattcaatttaaaggtttggggacatacaggctgctttcag 738

                                                                       
Query: 538 attatgtggacaaggctaaataaaaattatcacgttaatcatgggttgcatttggaataa 597
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 739 attatgtggacaaggctaaataaaaattaccacgttaatcatgggttgcatttggaataa 798

                                                                       
Query: 598 gtagagtgaagtcaggtgttggaaaggtgtttgaaaggtagacctgggaggagatttgga 657
           ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 799 gtagagtaaagtcaggtgttggaaagatgtttgaaaggtagacctgggaggagatttgga 858

                          
Query: 658 gagaattgtaaggta 672
           |||||||||||||||
Sbjct: 859 gagaattgtaaggta 873


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1073
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1063
Effective search space:   703706
Effective search space used:   703706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)