Query= MSMg01no289_m01.b1 MSMg01no289_m01.b1 CHROMAT_FILE:
MSMg01no289_m01.b1 PHD_FILE: MSMg01no289_m01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:07 2005
(678 letters)
>mm_chr12_9759997_9761073
Length = 1077
Score = 1149 bits (594), Expect = 0.0
Identities = 651/674 (96%), Gaps = 8/674 (1%)
Strand = Plus / Plus
Query: 5 gaattcagctctcccaactccaatgtaatagtttgaaacatttctggcttaaaatgtgca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagctctcccaactccaatgtaatagtttgaaacatttctggcttaaaatgtgca 264
Query: 65 ggatcacattagacgcaataaggtcttcattcttttactggtatcattaaaattatccct 124
||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 265 ggatcacattaga-ggaataaggtcttcattcttttactggtatcattaaaattatacct 323
Query: 125 tagaatcctttgacataggtagctgatattgtagcctagagtacaagagaaacatccatt 184
||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 324 tagaatcctttgacacaggtagctgatattgcagcctagagtacaagagaaacatccatt 383
Query: 185 tcttgctatgggataggtacatgaagactatctggataattctgggggaattatgttcac 244
||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tcttgctat-------gtacatgaagactatctggataattctgggggaattatgttcac 436
Query: 245 tattgtagttttctaggcttattctgccaataactagatgagagagatcacggaatccac 304
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 tactgtagttttctaggcttattctgccaataactagatgagagagatcacggaatccat 496
Query: 305 acagtggccatgcacagagattcctccaagcggaagatcacagcaggtgattgcttagac 364
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 acagtggccatgcacagagattcctccaagcggaagatcacagcaggtgattgcttagat 556
Query: 365 cccttttacataaaatggcatgttaaggaattattgcaagcccagtgtcagatttgaaag 424
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ccctttcagataaaatggcatgttaaggaattattgcaagcccagtgtcagatttgaaag 616
Query: 425 tcaccatatcagcaaggcattcaatgtggcatttctcctttgaacttaaacacttgagct 484
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 tcaacatatcagcaaggcattcaatgtggcatttctcctttgaacttaaacacttgagct 676
Query: 485 agcagccatcttctgagcctggaattatgctacaagttacgtactttgtatggagttagt 544
||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct: 677 agcagccatcttctgagcctggaattacgctacaagttacttactttgtatggagttagt 736
Query: 545 catgtggctgagctattagggagtacctaggcacacagtttctattcatctatggtttag 604
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 737 catgtggctgagctattagggagtacctaggcacacggtttctattcatctatggtttag 796
Query: 605 tctgggtttgtttgcatggtagctggagttttaagaggcacaataaaaggcagggaatca 664
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 797 tgtgggtttgtttgcatggtagctggagttttaagaggcaaaataaaaggcagggaatca 856
Query: 665 aggttttggaacac 678
||||||||||||||
Sbjct: 857 aggttttggaacac 870
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 678
Length of database: 1077
Length adjustment: 10
Effective length of query: 668
Effective length of database: 1067
Effective search space: 712756
Effective search space used: 712756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no289_m01.g1 MSMg01no289_m01.g1 CHROMAT_FILE:
MSMg01no289_m01.g1 PHD_FILE: MSMg01no289_m01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:08 2005
(229 letters)
>mm_chr12_9958879_9959507
Length = 629
Score = 435 bits (225), Expect = e-127
Identities = 228/229 (99%)
Strand = Plus / Minus
Query: 1 tttgagtgttttgagcttacacttaaagggaacacagctttaaaggcaagtcagtaacta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 tttgagtgttttgagcttacacttaaagggaacacagctttaaaggcaagtcagtaacta 370
Query: 61 ctggggaagaagagtaaattttgctgtggcagtataattgtagctatttgaactgagttt 120
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 369 ctggggaagaagagtaaattttgctgtggcagtataattgtagctattttaactgagttt 310
Query: 121 tatttctcttcagtgttcattctcctcttcaattgctatgtactgaacaccagctgggaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 tatttctcttcagtgttcattctcctcttcaattgctatgtactgaacaccagctgggaa 250
Query: 181 cacgctgaatactttgagtgctaaattctcagttttcatatctgactcc 229
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 cacgctgaatactttgagtgctaaattctcagttttcatatctgactcc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 229
Length of database: 629
Length adjustment: 9
Effective length of query: 220
Effective length of database: 620
Effective search space: 136400
Effective search space used: 136400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
