BAC Information

Click to search

BAC

Clone NameMSMg01-289O24
Chromosome12 (Build37)
Map Location 79,322,320 - 79,322,607
singlet/doubletsinglet
Overlap genenone
Upstream geneFut8, LOC230765, LOC666659, EG626215
Downstream geneGphn, 4921509E07Rik, Mpp5, Atp6v1d, LOC100041878, Eif2s1, Plek2, 6330442E10Rik, Plekhh1, Pigh, LOC666722, Arg2, Vti1b, Rdh11, Rdh12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-289O24.T7 (MSMg01no289_o24.b1)MSMg01-289O24.TJ (MSMg01no289_o24.g1)
ACCAG419354AG419355
length745744
length of high quality
(start - end)
301 (44 - 344)290 (73 - 362)
definitionCHROMAT_FILE: MSMg01no289_o24.b1 PHD_FILE: MSMg01no289_o24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:21 2005CHROMAT_FILE: MSMg01no289_o24.g1 PHD_FILE: MSMg01no289_o24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:21 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCAAGGATAAAACACAAGTCCTCAGTCTTAGCAAGAAGCACTCTAACC
TGCTGAGCCATCTCACCAGTGCTAATTTTCCTGTTCTGAGGAACCCCATA
GTAGGTCCAGTAATCATCTCCCTTCATATGTCCACCAGCACTTGTGTCTT
CTCTGTTTAGGTGAGATACACTGTATTATTTAATTTTCATTTCTTTGCCT
TATATATCTGTTGCCCATTTTCATACCTTCTTNTTTTTTTTTTTNTTTTT
TTTTGGTTNTTCGAGACAGGGTTTCTCTTTATAGCTCTGGCTGTCCTGGA
GCTCACTTTGTTTTTTTTTCTGCCCTCGCCCTCAGAAATCCACCTGCCTC
TGCCTCCCAAGTGCCCCCCCCAAAGGCAAGAAACAACACGCCCGGTGATA
CCGTTCAGTTTCTNTGCCNATTTCTAACGGGATTCTTGGTTTACAATTGA
GNTCGTACNTCATCTGCGTTTTAATCTCTTGGCAAAGNNCAGCTCCTATT
TTCTTATCCAACTATTTTTACCCTCCCACCTTCTGTTTTCTTTTGTGCTC
TCTTACCTTTACGCTATCTCTTTTTTTCTTTTTAGCTTTAACTTCTATTG
CTNTTTTTTCTCTTTCTTTGTCCCCTCACCCCTTTTCCCGCTCACTGACA
TATCGACCCTCTTTTTATCACTTATCTTGCATTTCCCTCTTCTTC
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAAACTTTTATCATGAA
TGGGTGTTGGATCTTGTCAAACGCTTTTTCTGCATCTAACGAGATGATCA
TGTGGTTTTTGTCTTTGAGTTTGTTTATATAATGGATTACATTGATGGAT
TTTCGTATATTAAACCATCCCTGCATCCCTGGAATAAAACCTACTTGGTC
AGGATGGATGATTGCTTTAATGTGTTCTTGGATTCGGTTAGCGAGAATTT
TATTGAGGATTTTTGCATCGATATTCATAAGAGAAATTGTTCTGAAGTTC
TCTATCTTTGTTTTTTTTTTCTCGCCCCCCCCTATCAGAGTAATAGTGGC
TTCATAAAATGACCCCCCCCACAGAAACTACTACTTCTATTTTGTGAAAT
AGTTTGTGGAGAATTGGAATTAGATCNTCTTTGAAGGTCTGATAGAACTC
TGCACTNNACCCATCTGGTCCTGGGCTTTTTATGGTTGGGAGATAATANN
AACTGCTTCTATTTCNTTACGTGATATGGNACTGGTTAGGACCGCTACTT
GGTACTGGTTCAAATTATGAACATGGCANCTTTTCAGTACAATGTCCNTT
TTTGCCCCGTTCTCCTGACTTCGTGAATTACCGTCATTCTTATAACCTTT
CGATGACTTATCTCNACTATATTCGTGCCGCTTCCCCCTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no289_o24.b1 MSMg01no289_o24.b1 CHROMAT_FILE:
MSMg01no289_o24.b1 PHD_FILE: MSMg01no289_o24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:21 2005
         (301 letters)



>mm_chr12_79322085_79322785
          Length = 701

 Score =  495 bits (256), Expect = e-144
 Identities = 283/297 (95%), Gaps = 9/297 (3%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaaggataaaacacaagtcctcagtcttagcaagaagcactctaacctgctgag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 gaattccaaggataaaacacaagtcctcagtcttagcaagaagcactctaacctgctgag 464

                                                                       
Query: 65  ccatctcaccagtgctaattttcctgttctgaggaaccccatagtaggtccagtaatcat 124
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 ccatctcaccagtgctaatcttcctgttctgaggaaccccatagtaggtccagtaatcat 404

                                                                       
Query: 125 ctcccttcatatgtccaccagcacttgtgtcttctctgtttaggtgagatacactgtatt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 ctcccttcatatgtccaccagcacttgtgtcttctctgtttaggtgagatacactgtatt 344

                                                                       
Query: 185 atttaattttcatttctttgccttatatatctgttgcccattttcataccttcttntttt 244
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||    ||||
Sbjct: 343 atttaattttcatttctttgccttacatatctgttgcccattttcatacctt----tttt 288

                                                                    
Query: 245 tttttttntttttttttggttnttcgagacagggtttctctttatagctctggctgt 301
           |||||||     ||||||||| ||||||||||||||||||| | |||||||||||||
Sbjct: 287 ttttttt-----tttttggtttttcgagacagggtttctctgtgtagctctggctgt 236


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 301
Length of database: 701
Length adjustment: 9
Effective length of query: 292
Effective length of database: 692
Effective search space:   202064
Effective search space used:   202064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)