Query= MSMg01no289_p17.b1 MSMg01no289_p17.b1 CHROMAT_FILE:
MSMg01no289_p17.b1 PHD_FILE: MSMg01no289_p17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:24 2005
(658 letters)
>mm_chr12_29079278_29080330
Length = 1053
Score = 1133 bits (586), Expect = 0.0
Identities = 639/658 (97%), Gaps = 5/658 (0%)
Strand = Plus / Plus
Query: 1 ggcctcaaaattttagaattctttctgcctcagcctcccaagggcttagatcacagttgt 60
|||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct: 201 ggcctcaaaattttagaattctttctgcctcagcctcccaagggctgagattacagttgt 260
Query: 61 aagccactgaagccaacttcacacttatggttttaaatatatacctcattctgtgcttaa 120
||||||| |||||||||| |||||| ||||||||||| ||||||||||||||||||||||
Sbjct: 261 aagccacggaagccaactacacact-atggttttaaaaatatacctcattctgtgcttaa 319
Query: 121 tcttcttgagttttctgctttcctgattttctttataataattttttttctgaataacaa 180
|||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 320 tcttcttgagttctctgctttcctgattttctttataataatttttt--ctgaataacaa 377
Query: 181 aaccaagcaagaattatttttaaaaaaaaaagttcatttaaactaaatacttggtgggtt 240
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 378 aaccaagcaagaattattt--aaaaaaaaaagttcatttaaactaaatacttggtgggtt 435
Query: 241 cacatattattttagaatcagacatcaagtaggcttatttcagtctccactttccttcct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 cacatattattttagaatcagacatcaagtaggcttatttcagtctccactttccttcct 495
Query: 301 ccatctgttccccatatgcactcatgtgcacgcatatgcacacacacacgcacacataca 360
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 496 ccatctgttccccatatgcactcatgtgcacgcatatgcacacacacatgtacacataca 555
Query: 361 tgcaaacacacgtatgtgtgacagtcatatccttgcctctgttcccacaccaggtcatgt 420
|||| |||||||||||||||||||||| || || |||||||||||||||||||||||||
Sbjct: 556 tgcacacacacgtatgtgtgacagtcacatgctcacctctgttcccacaccaggtcatgt 615
Query: 421 cacctaggatctctcctatgcttcaaactcaatcagaacagatgttttcctttcccaaaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 cacctaggatctctcctatgcttcaaactcaatcagaacagatgttttcctttcccaaaa 675
Query: 481 tggtctcattgttcatgctttgaaggtgagtgttttgtctagtgggaaccactgctttct 540
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 676 tggtctcattgttcatgctttgaaggtgagtgttttgtctagtggaaaccactgctttct 735
Query: 541 ttcaaggtaaccccgggcacattgccgttgtctgcagttttatttatttgctttggtttt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 ttcaaggtaaccccgggcacattgccgttgtctgcagttttatttatttgctttggtttt 795
Query: 601 cattagctgctgctgtttaagatattcttgacatctgatttgtactatttcagcagat 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 cattagctgctgctgtttaagatattcttgacatctgatttgtactatttcagcagat 853
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1053
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1043
Effective search space: 675864
Effective search space used: 675864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no289_p17.g1 MSMg01no289_p17.g1 CHROMAT_FILE:
MSMg01no289_p17.g1 PHD_FILE: MSMg01no289_p17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:24 2005
(601 letters)
>mm_chr12_29241624_29242624
Length = 1001
Score = 938 bits (485), Expect = 0.0
Identities = 497/501 (99%)
Strand = Plus / Minus
Query: 101 ggacaattcacacatgaattatagtgtgtgtgtgtgtgctgtgtgcatgtgtctgtacac 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1001 ggacaattcacacatgaattatagtgtgtgtgtgtgtgctgtgtgcatgtgtctgtacac 942
Query: 161 gttcacttatgtctttatgtgtgtgtgtgtgcatgtgtgttgaattccagtttgacaggc 220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 941 gttcacttatgtctttatgtgtgtgtgtgtgcatgtgtgttgaattccagtttgacaggc 882
Query: 221 tggccttgacctcctgaccctcctgtttcttttttcccaagtgctgaagttacagatgtg 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 881 tggccttgacctcctgaccctcctgtttcttttttcccaagtgctgaagttacagatgtg 822
Query: 281 taccatgccaccacacccgctttgtttatggtaaacacaatatgttatgtgagcttctcc 340
|||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 821 taccatgccaccacacttggtttgtttatggtaaacacaatatgttatgtgagcttctcc 762
Query: 341 tgccggtgtttaggttggctttctcaagcccaagttagcttttgatttattgcttatttt 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 tgccggtgtttaggttggctttctcaagcccaagttagcttttgatttattgcttatttt 702
Query: 401 gaattccaggctagtgagaatggccttctcctggtcccgggttgtgagtgggcagtgttc 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 gaattccaggctagtgagaatggccttctcctggtcccgggttgtgagtgggcagtgttc 642
Query: 461 cgattggcacatcctggagtcatcactcaaattgaaattgatacgaagtactttaaaggt 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 cgattggcacatcctggagtcatcactcaaattgaaattgatacgaagtactttaaaggt 582
Query: 521 aagctcttggcaaggcaggcagcaccacacagctggcgggatccctgaacaggtaccagg 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 aagctcttggcaaggcaggcagcaccacacagctggcgggatccctgaacaggtaccagg 522
Query: 581 tgctgtggaagtcagctggag 601
|||||||| ||||||||||||
Sbjct: 521 tgctgtgggagtcagctggag 501
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 1001
Length adjustment: 10
Effective length of query: 591
Effective length of database: 991
Effective search space: 585681
Effective search space used: 585681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
