BAC Information

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BAC

Clone NameMSMg01-290B18
Chromosome12 (Build37)
Map Location 61,734,787 - 61,735,378
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665644, EG622488, LOC665665, Ppia-ps12_475.1
Downstream geneLOC100040300, LOC665677, Nanog-ps2, Lrfn5, LOC665699
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-290B18.T7 (MSMg01no290_b18.b1)MSMg01-290B18.TJ (MSMg01no290_b18.g1)
ACCAG419481AG419482
length719721
length of high quality
(start - end)
669 (49 - 717)637 (80 - 716)
definitionCHROMAT_FILE: MSMg01no290_b18.b1 PHD_FILE: MSMg01no290_b18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:33 2005CHROMAT_FILE: MSMg01no290_b18.g1 PHD_FILE: MSMg01no290_b18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCATTCTGAATGTACAAGCTTTCACTTCAGCCAGCAATGGAAG
ACTTTTAACTTTATGTCCTGGTCAACATTAGTTGTCCCTTGTGCTATATC
CTAGTTATTCTGACATGTGTATGATGGAATCTCAACATAGTTTTGATTTG
TATTTCCCTGATTGCTAAACACATTTAGCATTTCTTATAGCATTTCTCAG
CCATTTGAGAATCCTGTATTAAGAATTATATATTTAGATCTATACCCCAT
TTTAAGTGCTTCATTTGGTTTCTGGATATCTAGTCTTTTGAGTTCTTTTT
ATATTTTGGATATGAGTCCTCTATTAGATATGGAAATTTTAAAATCTTTT
CCCATTCTGTAGACTGAAGTTTTGTCTGGATGATGGTGTCCTTTGCCATA
TAGAAGCTTTTCAATTTCTAGATTTTATTAATTGTTCATCTTAGTGCTTG
TTCTATGTTCTGTTCCAAAGTCTTTTCAAGTGCCAATGAGCTCAAAATTT
CCCCAAATTTTCTGTAATCAGGTTGAATTATTTTGATTTTGTAAAACTTA
TATTACTTAGAGTTGTATATTTTGCACGGTGGAAAGTACAGATCTACTTG
TATTCTTCTACATGTAGTTATCCAGTTTGAAAAGCACCATTGAATAATGA
AAGCTCTGTTTTTATTAGT
NCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAGGGCAGTGAGGTGGGAGTG
GGTGGGTAGGTGGAGGAGCACCATCATAGAAGCAGGGGAGGGGTTGCTAT
AGGGGATTTGCAGAGGGGAAACTAGGAAGGGGAATCATATTTGAAAAGTA
AATAAATAAAATAACAAATATGATTTTTTTAAATAAAATAAAATAAAATA
AAAAGAAATATATTCTTACCATGGTATGTACTCACAGGTACTTGCTAAAG
GATTCTTTAAGTTAAAAGAAAAAAAATACACATGCATATAATATTCAGAG
TTGTAAAAGATTCTAAAACTAAGGCTAGTAATCTCTGAATTACTCTTACT
TTTTACCCAAGTTTTAAAACTATTTGTCTTCAATGTTCATTAATGCCTTT
CCTGAAATTGATTATTAGATATATTTTTTAATATTTTTTATTATTATGTA
TTTTCCTCAATTACATTTAGAATGGTATCCCAAAAGTCCCCCATACACTC
CCCTCCCCCACTTCCCTACCCACCCATTCCCATTTTTTGGCCTTGGCATT
CCCCTGTACTGGGGCATATAAAGTTTGGGTGTCCAATGGGCCTCTCTTTC
CAGTGATGGCCGACTAGGCCATCTTTTTTTTTTTAATTAGGTATTTTCCT
CATTTACATTTTCAATGCTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no290_b18.g1 MSMg01no290_b18.g1 CHROMAT_FILE:
MSMg01no290_b18.g1 PHD_FILE: MSMg01no290_b18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:34 2005
         (637 letters)



>mm_chr12_61734612_61735643
          Length = 1032

 Score =  973 bits (503), Expect = 0.0
 Identities = 574/601 (95%), Gaps = 12/601 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tagggcagtgaggtgggagtgggtgggtaggtggaggagcaccatcatagaagcagggga 60
           |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 767 taggacagtgaggtgggagtgggtgggtgggtggaggagcaccatcatagaagcagggga 708

                                                                       
Query: 61  ggggttgctataggggatttgcagaggggaaactaggaaggggaatcatatttgaaaagt 120
           |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 707 gggg-tgctataggggatttgcagaggggaaactaggaaggggaataatatttgaaaagt 649

                                                                       
Query: 121 aaataaataaaataacaaatatgatttttttaaataaaataaaataaaataaaaagaaat 180
           ||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 648 aaataaataaaataacaaatacga-ttttttaaataaaataaaataaaataaaaagaaat 590

                                                                       
Query: 181 atattcttaccatggtatgtactcacaggtacttgctaaaggattctttaagttaaaaga 240
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 589 ttattcttaccatggtatgtactcacaggtacttgctaaaggattctttaagttaaaag- 531

                                                                       
Query: 241 aaaaaaatacacatgcatataatattcagagttgtaaaagattctaaaactaaggctagt 300
            |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct: 530 -aaaaaatacacatgcatataatattcagagttgttaaagcttctaaaactaaggctagt 472

                                                                       
Query: 301 aatctctgaattactcttactttttacccaag-ttttaaaactatttgtcttcaatgttc 359
           |||||||||||||||||||||||||||||||| |||||||||||    ||||||||||||
Sbjct: 471 aatctctgaattactcttactttttacccaagtttttaaaacta----tcttcaatgttc 416

                                                                       
Query: 360 attaatgcctttcctgaaattgattattagatatattttttaatattttttattattatg 419
           ||||||||||||||||||||| |||||||||||| | |||||||||||||||||||||||
Sbjct: 415 attaatgcctttcctgaaatttattattagatat-tattttaatattttttattattatg 357

                                                                       
Query: 420 tattttcctcaattacatttagaatggtatcccaaaagtcccccatacact--cccctcc 477
           |||||||||||||||||||||||||||||||||||||||||||||||| ||  |||| ||
Sbjct: 356 tattttcctcaattacatttagaatggtatcccaaaagtcccccataccctccccccccc 297

                                                                       
Query: 478 cccacttccctacccacccattcccattttttggccttggcattcccctgtactggggca 537
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 296 cccacttccctacccacccattcccattttttggccctggcattcccctgtactggggca 237

                                                                       
Query: 538 tataaagtttgggtgtccaatgggcctctctttccagtgatggccgactaggccatcttt 597
           ||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct: 236 tataaagtttgcgtgtccagtgggcctctctttccagtgatggcccactaggccatcttt 177

            
Query: 598 t 598
           |
Sbjct: 176 t 176


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1032
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1022
Effective search space:   640794
Effective search space used:   640794
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)