Query= MSMg01no290_f04.b1 MSMg01no290_f04.b1 CHROMAT_FILE:
MSMg01no290_f04.b1 PHD_FILE: MSMg01no290_f04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:50 2005
(332 letters)
>mm_chr12_84934932_84935664
Length = 733
Score = 621 bits (321), Expect = 0.0
Identities = 327/329 (99%), Gaps = 1/329 (0%)
Strand = Plus / Plus
Query: 5 gaattccaggccagcctagctacagagtgaaacttctcaaaacaaaaccaagaacaacct 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaggccagcctagctacagagtgaaacttctcaaaacaaaaccaagaacaacct 264
Query: 65 acctaagtaaatttgactccagacaacttaaggcttctgaggccccggtcttttctgcct 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acctaagtaaatttgactccagacaacttaaggcttctgaggccccggtcttttctgcct 324
Query: 125 ctaaggggcactgcctccttcctgttttgcagagcaagttcc-agcaacaggcggatata 183
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 325 ctaaggggcactgcctccttcctgttttgcagagcaagttcccagcaacaggcggatata 384
Query: 184 cagacaggagtccttaatggctggcgacttacctggatctcttcattttcgtctaccagg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cagacaggagtccttaatggctggcgacttacctggatctcttcattttcgtctaccagg 444
Query: 244 aggaagctcacaaccctctctgtcatcttcttcctcttggtctcctcatccatctcttcc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aggaagctcacaaccctctctgtcatcttcttcctcttggtctcctcatccatctcttcc 504
Query: 304 ccctccagggactcctgtaccttactgac 332
||||||||||||||||| |||||||||||
Sbjct: 505 ccctccagggactcctggaccttactgac 533
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 332
Length of database: 733
Length adjustment: 9
Effective length of query: 323
Effective length of database: 724
Effective search space: 233852
Effective search space used: 233852
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no290_f04.g1 MSMg01no290_f04.g1 CHROMAT_FILE:
MSMg01no290_f04.g1 PHD_FILE: MSMg01no290_f04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:50 2005
(646 letters)
>mm_chr12_85025734_85026779
Length = 1046
Score = 1040 bits (538), Expect = 0.0
Identities = 557/564 (98%), Gaps = 3/564 (0%)
Strand = Plus / Minus
Query: 86 aatatgtttcctcagtttctataattgggtacaactaccaacaatgtaaagctgccagga 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1046 aatatgtttcctcagtttctataattgggtacaactaccaacaatgtaaagctgccagga 987
Query: 146 aaaaataaaaagctgttgaactattcatttttccttttgttatcaaaaaggaactgagtg 205
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 986 aaaaataaaaaactgttgaactattcatttttccttttgttatcaaaaaggaactgagtg 927
Query: 206 ggctagagagattgcctagcagtttagaggtctgactgctctttcaga--ccatgagttt 263
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 926 ggctagagagattgcctagcagtttagaggtctgactgctctttcagaggtcatgagttt 867
Query: 264 aatccccagcaagcacatggtggctcaaaatcatctgtaatgggctctgatgccctagtc 323
|||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct: 866 aatccccagcaagcacatggtggctcaaaaccatctgtaatggggtctgatgccctagtc 807
Query: 324 tggtgtgtattcatatacataataataataaaaaagggaatctgagtattgtctgacttg 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 tggtgtgtattcatatacataataataataaaaaagggaatctgagtattgtctgacttg 747
Query: 384 tttcttagtattttggaagtggaggcaaaatactgagttctacaactgagctccaagggc 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 tttcttagtattttggaagtggaggcaaaatactgagttctacaactgagctccaagggc 687
Query: 444 agacaggtgcctaaataaagccaaggagagacagaaggaagcagggaggaaaaaaggaca 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 agacaggtgcctaaataaagccaaggagagacagaaggaagcagggaggaaaaaaggaca 627
Query: 504 ggaaaggacttcaatggaatgaatctctgggagaagtagacttaaaatggtaaggttcta 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 ggaaaggacttcaatggaatgaatctctgggagaagtagacttaaaatggtaaggttcta 567
Query: 564 gcagtggtggtgcatgcctctagtcccagcacccacaatggcagagac-ggaggatctct 622
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 566 gcagtggtggtgcatgcctctagtcccagcacccacaatggcagagacaggaggatctct 507
Query: 623 atgagttcaaggtcacactgctat 646
||||||||||||||||||||||||
Sbjct: 506 atgagttcaaggtcacactgctat 483
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1046
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1036
Effective search space: 658896
Effective search space used: 658896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
