BAC Information

Click to search

BAC

Clone NameMSMg01-290M02
Chromosome12 (Build37)
Map Location 115,839,680 - 115,840,346
singlet/doubletsinglet
Overlap geneIgh
Upstream geneIghv6-1, Ighv2-3, Ighv5-5, Ighv5-6, Ankrd12-like, Ighv5-7, EG668389, Ighv5-8, Ighv5-9, Ighv5-10, Ighv2-5, Ighv5-11, Ighv5-12, Ighv2-6, Ighv5-9-1, EG628098, Ighv2-9-1, Ighv5-13, Ighv2-6-8, EG629785, Ighv2-7, LOC668405, Ighv5-15, Ighv5-16, Ighv5-17, Ighv5-18, Ighv2-8, Ighv2-9, Ighv5-19, Ighv7-1, Ighv7-2, Ighv14-1, Ighv4-1, Ighv3-1, Ighv11-1, Ighv14-2, Ighv4-2, Ighv3-2, Ighv11-2, Ighv14-3, EG629812, Ighv6-2, Ighv9-1, Ighv12-1, EG629818, Ighv12-2, Ighv9-3, Ighv7-3, Ighv15-1, Ighv14-4, EG668438, Ighv7-4, EG629833, EG633457, Ighv13-1, Ighv3-6, EG636260, Ighv3-7, Ighv5-21, Ighv3-8, Ighv8-1, Ighv1-1, Ighv13-2, EG435321, Ighv6-3, EG628398, EG639510, Ighv6-6, EG432701, EG629849, Ighv1-2, Ighv10-1, Ighv1-3, Ighv1-4, Ighv10-2, EG668469, EG380809, Ighv1-6, EG668474, Ighv10-4, Ighv1-8, Ighv15-2, Ighv1-9, Ighv1-10
Downstream geneIghv1-11, EG629860, Ighv1-13, Ighv1-14, Ighv1-15, EG629866, Ighv1-17-1, Ighv1-17, Ighv1-18, EG668493, Ighv1-19, EG668497, Ighv1-21-1, Ighv1-21, Ighv1-22, Ighv1-23, Ighv1-24, Ighv1-25, Ighv1-26, Ighv1-27, Ighv1-28, Ighv1-29, Ighv1-30, Ighv1-31, Ighv1-32, Ighv1-33, Ighv1-34, EG668515, Ighv1-36, Ighv1-37, Ighv1-38, Ighv1-39, Ighv1-40, Ighv1-41, EG629906, EG629908, Ighv1-44, Ighv1-45, Ighv1-46, Ighv1-47, Ighv8-3, EG629919, Ighv1-48, Ighv1-49, EG640506, Ighv1-50, Ighv1-51, Ighv1-52, Ighv1-53, EG629930, EG668534, EG211331, Ighv1-55, EG634662, Ighv1-56, EG629936, Ighv8-7, Ighv1-57, Ighv8-8, Ighv1-58, EG432708, Ighv1-60, Ighv1-61, Ighv1-62, EG668544, EG238448, EG668549, EG432709, EG668552, Ighv1-63, Ighv1-64, Ighv8-10, Ighv1-65, EG668554, EG636462, LOC217924, Ighv1-66
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-290M02.T7 (MSMg01no290_m02.b1)MSMg01-290M02.TJ (MSMg01no290_m02.g1)
ACCAG419948AG419949
length716722
length of high quality
(start - end)		672 (45 - 716)646 (77 - 722)
definitionCHROMAT_FILE: MSMg01no290_m02.b1 PHD_FILE: MSMg01no290_m02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:23 2005CHROMAT_FILE: MSMg01no290_m02.g1 PHD_FILE: MSMg01no290_m02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTAAAATTATATCGGTGTTTATTAAGCTCTTTTATAGTGGGACTGT
ATTAGCTCCTTTTCTGATACCCAAAACTGCAATGCGAACTTTGCCAGTCT
ACCAATTGTCACCAGTTAATTGCTCTTAGATGGTAACCAGACTTTCTCCT
ACTCAGAGCACATTCCAAGAGCTTGTAAAACAATTAACCAAAGGTCATAA
AAGGGAACTAATGATTTATTATAGGTTCTAGGACAGAAGATAAAATACTG
ACTGGGATTATCTATACCAAATTCCACTAATAACTTAGTTATGATTTTAA
ACCTTCAGTGAACCTGTGGAGCTGGGCCAAGTGATGGATGCTTACCCAGA
TAATTACTCCTAATGAATATGCATATAAACATCCTTTGTTGTAAACTTCT
AATTCAATTTATGATTTGATTTTGTGTGTGTATGTGTGTGTGAACTTCTG
TGTGAACTCTTATGTAGGGCTATGGAGGGGAGGGAGGGATAGCGTTCAGA
GCAACACTGCCCTATGAGGAGGCAGAGAGTTTAAAGCAGAAGCTTCTGTT
GCCTGATGATGGGCAGAGTCATTTGCATACTCACAGGTCAAAGCCAAGGT
GGTGCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGN

CGAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACACAATGAGAAGACCAAAC
CTACGGATAATAGGAGTATTATGACAATGAAGATTTTCAACTTAAAGGGT
CAGCAAATATCTTCAACAAAATTATAGAAGAAAACTTCCCAAACCTAAAG
AAAGAGATGCCCATGAACATACAAGAAGCCTACAGAACTCCAAATAGAGT
GGACCAGAAATGAAATTCCTCCTGACTCATAATAATCAGAACAACAAATG
CACTAAATAAATATAGATTATTAAAAGCAGTAAGAGAAAAATGTCAAGTA
ACATATAATGGCAGACCTATTGGAATCAGGTCAGACTTCTTACCACAGAC
TATGAAAGCCAGAAGATCCTGGACAGATGATATGCAGAACACAAATGCTA
AGAGAACACAAATGCTAGCCTAGGCTACTATGCCCAGCAAAACTCTAAAT
TACCATAGATGGAGAAACCAAAATATTCCATGATAAAACCAAATTCACAC
AATATCTTTCCACAAATCCAGCCCTTCAAAGGATAATAAAGGGAAAACAC
CAACACAAGGACACAAACTACACCCTAGAAAAAGCAAGGAAGTAATCCTT
CCACAAATCCTAAAAGAAGACAGCCGCAAGAACAAAATACCAACTTTAAC
AACAAAAATAACAGGAAGAAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no290_m02.b1 MSMg01no290_m02.b1 CHROMAT_FILE:
MSMg01no290_m02.b1 PHD_FILE: MSMg01no290_m02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:23 2005
         (672 letters)



>mm_chr12_115839476_115840547
          Length = 1072

 Score = 1274 bits (659), Expect = 0.0
 Identities = 665/667 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctaaaattatatcggtgtttattaagctcttttatagtgggactgtattagctc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctaaaattatatcggtgtttattaagctcttttatagtgggactgtattagctc 264

                                                                       
Query: 65  cttttctgatacccaaaactgcaatgcgaactttgccagtctaccaattgtcaccagtta 124
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cttttctgatagtcaaaactgcaatgcgaactttgccagtctaccaattgtcaccagtta 324

                                                                       
Query: 125 attgctcttagatggtaaccagactttctcctactcagagcacattccaagagcttgtaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 attgctcttagatggtaaccagactttctcctactcagagcacattccaagagcttgtaa 384

                                                                       
Query: 185 aacaattaaccaaaggtcataaaagggaactaatgatttattataggttctaggacagaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aacaattaaccaaaggtcataaaagggaactaatgatttattataggttctaggacagaa 444

                                                                       
Query: 245 gataaaatactgactgggattatctataccaaattccactaataacttagttatgatttt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gataaaatactgactgggattatctataccaaattccactaataacttagttatgatttt 504

                                                                       
Query: 305 aaaccttcagtgaacctgtggagctgggccaagtgatggatgcttacccagataattact 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aaaccttcagtgaacctgtggagctgggccaagtgatggatgcttacccagataattact 564

                                                                       
Query: 365 cctaatgaatatgcatataaacatcctttgttgtaaacttctaattcaatttatgatttg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cctaatgaatatgcatataaacatcctttgttgtaaacttctaattcaatttatgatttg 624

                                                                       
Query: 425 attttgtgtgtgtatgtgtgtgtgaacttctgtgtgaactcttatgtagggctatggagg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 attttgtgtgtgtatgtgtgtgtgaacttctgtgtgaactcttatgtagggctatggagg 684

                                                                       
Query: 485 ggagggagggatagcgttcagagcaacactgccctatgaggaggcagagagtttaaagca 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ggagggagggatagcgttcagagcaacactgccctatgaggaggcagagagtttaaagca 744

                                                                       
Query: 545 gaagcttctgttgcctgatgatgggcagagtcatttgcatactcacaggtcaaagccaag 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gaagcttctgttgcctgatgatgggcagagtcatttgcatactcacaggtcaaagccaag 804

                                                                       
Query: 605 gtggtgcagagagagagagagagagagagagagagagagagagagagagagagagagaga 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 gtggtgcagagagagagagagagagagagagagagagagagagagagagagagagagaga 864

                  
Query: 665 gagagag 671
           |||||||
Sbjct: 865 gagagag 871


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 134
Number of extensions: 43
Number of successful extensions: 43
Number of sequences better than 10.0: 1
Number of HSP's gapped: 41
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1072
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1062
Effective search space:   703044
Effective search space used:   703044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |