Query= MSMg01no290_p24.b1 MSMg01no290_p24.b1 CHROMAT_FILE:
MSMg01no290_p24.b1 PHD_FILE: MSMg01no290_p24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:41 2005
(324 letters)
>mm_chr12_66773981_66774704
Length = 724
Score = 572 bits (296), Expect = e-168
Identities = 314/320 (98%)
Strand = Plus / Minus
Query: 5 gaattcacttcaaaaccacaggacttcaagagcttcttaagcaatggcatgccttaaatt 64
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 gaattcacttcaaaaccagaggacttcaagagcttcttaagcaatggcatgccttaaatt 465
Query: 65 gggattgagatcagccgctgtgtgaatatggctctgagcttgcagaagcaagtgctgcca 124
||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 464 gggattgagatcagctgctgtgtgaatctggctctgagcatgcagaagcaagtgctgcca 405
Query: 125 aaggaatggcgtcttcacactgcagcaagcctctcacctctccatcattctgacttgtct 184
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 aagaaatggcgtcttcacactgcagcaagcctctcacctctccatcattctgacttgtct 345
Query: 185 ggctcaaagcttagaaatgggatttggttttagttctacattattctctatggatctata 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 ggctcaaagcttagaaatgggatttggttttagttctacattattctctatggatctata 285
Query: 245 tattaaattacagctggagtatttctccagatgtgatatttcaaacaggaaattgatttt 304
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 284 tattaaattacagctggagtattactccagatgtgatatttcaaacaggaaattgatttt 225
Query: 305 taattgactattgtgtgctg 324
||||||||||||||||||||
Sbjct: 224 taattgactattgtgtgctg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 724
Length adjustment: 9
Effective length of query: 315
Effective length of database: 715
Effective search space: 225225
Effective search space used: 225225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no290_p24.g1 MSMg01no290_p24.g1 CHROMAT_FILE:
MSMg01no290_p24.g1 PHD_FILE: MSMg01no290_p24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:41 2005
(571 letters)
>mm_chr12_66616634_66617600
Length = 967
Score = 1004 bits (519), Expect = 0.0
Identities = 555/569 (97%), Gaps = 4/569 (0%)
Strand = Plus / Plus
Query: 1 cagtgatgttctaccatgaaaaccaagtggaaaatgttttcatgtgtaaaccttaaagta 60
|||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct: 201 cagtgatgttctaccatgaaaaccaagtggaaaatgttttcatgtggaaacattaaagta 260
Query: 61 ttacgctgttttgaaaaaatgagattttatttataagaaaaaaaggtattaatgcttgat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttacgctgttttgaaaaaatgagattttatttataagaaaaaaaggtattaatgcttgat 320
Query: 121 atattcagatattatctcaacaaagatttcgacattaactcctctttagtatcccactta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atattcagatattatctcaacaaagatttcgacattaactcctctttagtatcccactta 380
Query: 181 aaaaaccaaagcattagtttagaaaaatatttttcactttttgtatacttactcgtctct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaaaccaaagcattagtttagaaaaatatttttcactttttgtatacttactcgtctct 440
Query: 241 gaggatgctgtcttatccaatatgtaccatctaactttattttagattaaggggataata 300
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaggatgctgtcttagccaatatgtaccatctaactttattttagattaaggggataata 500
Query: 301 ttttatatactctgtgaggatgatggttttcctgatgagcacttattctaataagttcat 360
|||||||| ||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct: 501 ttttatat----tgtgagggtgatggttttcctgatgagcacttattccaataagttcat 556
Query: 361 tcaagcttagcttaataatcagcctaattagaaggctctgcttcacttttctctttgacc 420
||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct: 557 tcaagcttagcttaataatcagcctaattagaagggtctgcttcacatttctctttgacc 616
Query: 421 cttgcatttatattcattcctggtacattcttttcagttaagtatttatgagtatgaaag 480
|||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct: 617 cttgcatttatattcattcctggtacgttcttttcaattaagtatttatgagtatgaaag 676
Query: 481 tttctgctaaaaagagaaataaatagctttgactcatcctctgcatcaaaagataaatgg 540
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 tttctgctaaaaagagaagtaaatagctttgactcatcctctgcatcaaaagataaatgg 736
Query: 541 agcccaagacttgctgagctctgtgcagg 569
|||||||||||||||||||||||||||||
Sbjct: 737 agcccaagacttgctgagctctgtgcagg 765
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 967
Length adjustment: 10
Effective length of query: 561
Effective length of database: 957
Effective search space: 536877
Effective search space used: 536877
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
