BAC Information

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BAC

Clone NameMSMg01-291E14
Chromosome12 (Build37)
Map Location 72,094,138 - 72,094,433
singlet/doubletsinglet
Overlap genePsma3
Upstream geneNin, ENSMUSG00000056391, Gm804, Pygl, Trim9, Txndc1, LOC100040965, LOC100041061, Frmd6, Actr10
Downstream gene3110056K07Rik, Arid4a, Timm9, LOC100041035, 2700049A03Rik, LOC666162, Dact1, LOC100041190, Daam1, LOC666213
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-291E14.T7 (MSMg01no291_e14.b1)MSMg01-291E14.TJ (MSMg01no291_e14.g1)
ACCAG420326AG420327
length738741
length of high quality
(start - end)
312 (41 - 352)284 (70 - 353)
definitionCHROMAT_FILE: MSMg01no291_e14.b1 PHD_FILE: MSMg01no291_e14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:26:02 2005CHROMAT_FILE: MSMg01no291_e14.g1 PHD_FILE: MSMg01no291_e14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:26:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CTGTAATATTCTATAGAGCCCTCTGTAATATGAAAGCTGCAATTAGGATT
CTATAAACCTTTATGTCCCATAAGCTAATGGCACTAGGATAGAACACAGG
CTTGAACCAGATTTATGATCAGGGAAAACCTTCCTTCTAGGCTGAATGTA
AAACCGTTACCTGATAACTAAAGGTTACGAACTGAGAGTGAATGAGTTAT
TGTAGGTGCAAGGACAGAAGATAAAACATTGACTGGATTGATCTATACAA
AACTCCAACTAATGATCTCCTAGGCAGATGATTTGCTTCTTGACAAAACT
GTGTTATCNTACACCCCCCCCCACCATTTTAAATTCTTAATAAACCTGTG
GAGCTAGCCCCCCATAAAGAAAGCTAAGTAAGACAACTAGTCTTTTTGTT
GTTTTGTTTTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGG
AACTCACTTTGTAGACCAGACTGGTCTTGAACTTAGAAATCCACCTGCCT
CTGCCTCCCGAGTGAGTGCTGGGATTAAAGGTGTGCGCCACCACTGCCTG
GCGAGATACTTCTTATTCAATTTTCAATTTGAACTTATGATTGAACTTGT
CGTGAGCTTTGAAAAAAGATGCTTAGAATACCATGCGATCATGCGCCCTG
ATAAAGTACCAGAACCAGGAACGATCTCAATAAGAGCA
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTGCCGGGCGTGGTGGCACACACCTTTAATC
CAGCACCTGTTTTGCAGAGGCAGAGGCAGAGGCAGGTGGATTTCTGAGTT
CGAGGCCACCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGTTATAC
AGAGAAACCCTGTCTCAAAAAAACAAAAAAGAAAAAAAAAAAAAGTTTTA
TAAGTCAAGCTTACTGTTATTTTTAAGTGAGTTCACCTGTGAATAATGAT
TATTTGGGGGAGGAGGCGACAGGAAATGATCTCTATGCACTTGAAGATTA
GGGTTTTTTTTTTGCACCACCCCCCATAATCCTCATATTTAATATATGGT
TTGATTTTACCCCCACTAAAGGAAGACATGAAATTGTTCCCAAAGACATA
AGAGAGGAAGCAGAGAAATATGCCAAGGTAAGCAGCAACATACACATTGT
TCTGAACAGGATCATGGTAATGAAGTAATTTGGTTGATGTTTGCTTGAAA
TTAGGGTAAACTGTCTTTTAGATTACTGTTTTTTTTGTTTGTTTTTTTAA
AGATTTATTTATTATATCTTAAGTACACTGTAGCTGACTTCAGACACACC
AGATGAGGGTATCAGATTTCATTACCGGCGGTTGTGAGCCACCATGTGGT
TGCTGGGATTTGAACTTGTGACCTCTGGAAGAGCAGTCTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no291_e14.g1 MSMg01no291_e14.g1 CHROMAT_FILE:
MSMg01no291_e14.g1 PHD_FILE: MSMg01no291_e14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:26:02 2005
         (284 letters)



>mm_chr12_72093950_72094633
          Length = 684

 Score =  441 bits (228), Expect = e-128
 Identities = 274/300 (91%), Gaps = 20/300 (6%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgccgggcgtggtggcacacacctttaatccagcacct----gttttgcagaggcagag 56
           ||||||||| |||||||||||||||||||||||||||||    |    ||||||||||||
Sbjct: 189 ttgccgggcatggtggcacacacctttaatccagcacctgggag----gcagaggcagag 244

                                                                       
Query: 57  gcagaggcaggtggatttctgagttcgaggccaccctggtctacagagtgagttccagga 116
           ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 245 gcagaggcaggcggatttctgagttcgaggccagcctggtctacagagtgagttccagga 304

                                                                       
Query: 117 cagccagggttatacagagaaaccctgtctcaaaaaaacaaaaaagaaaaaaaaaaa-aa 175
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 305 cagccagggctatacagagaaaccctgtctcaaaaaaacaaaaaagaaaaaaaaaaacaa 364

                                                                       
Query: 176 -----------gttttataagtcaagcttactgttatttttaagtgagttcacctgtgaa 224
                      | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 aaaaaaaaaccgatttataagtcaagcttactgttatttttaagtgagttcacctgtgaa 424

                                                                       
Query: 225 taatgattatttgggggaggaggcgacaggaaatgatctctatgcacttgaagattaggg 284
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 425 taatgattatttgggggaggaggcaacaggaaatgatctctatgcacttgaagattaggg 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)