ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTGCTGTTATCCTACAATATTTTTTTCTCTTAAGAATGAAGAGC
AATAACTGACTTCCTTCAGGTCTGATGATTCCTCCAACTTTGAGGACAGT
AATTTCTGATTCATGACATACCCAAGTGATTAAAAATAAAATGCCTCCAT
CCTCCATCTTGTAAAGTGGTTAGCATAGCGCCACAACTTGCAGTTTATTT
GCTAGGCAAAAATGAAGACTGTGCTTAGAGTGCTACTTTCTCTGCAAGGA
AGAGATTTCAGAAGCATTCCTGCCATGATGCTTCATTTCTTCCTCTCCAT
CAGGATGAGAGAAGAAACAGACTACCTCTCCTTTAATACATTAACTTGCA
TATTAAAAAAATGAGTGCATTTCAACCAAATCATTGTCATGTGGAAGATT
ATTTAGGACTTAGATCTTATTTTTGGCTTATCTCCAAATGTCAGTGGGTG
AGAAGAACATAATGTCAGGTCTCCAAAAGGTTTGTGATTACTGCTATTAT
CCTAACAAGCAAGTTTCATAAGTAAGCCCTATGGCAAAGAATTTTGAATC
GGTTAGAGTGACTATTATTTAAATAAACAAGTGACTGATTTTTGAAGTAA
TATTTTTATAATTACATTTAAGTATTGAAATTTAAAATATGTATGACTAG
GATAATAATAAAATTTTAATATAAAACATTANAATTTA

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTTCGCGAAATCCACTTGATTTATTATAAAAACCAAGCACACTTAC
TGAACCGTTTTTCTTGATTTGGAGATAGCTTCATGATCATTATAAAGTTT
TATCTTATCTGGGCAATTAAAAAACTCATGTTTCATTTGATTTTAACTTT
AAAATATTTTTAATGTTGGCTTAGTTTTCCATTAGGGATGGGATTNNNTT
AAGGTGGGTTTAATTAATNNNTTTTTCAATGTTGTAAAAACTAAACTTTG
TGGTTAATATGGTGGAGCAAAATAAAGGGGTTCCCTTTAAATTTAAATTT
TAAAATTCCCAATCCCTTTTTCCAAATTATTTTTTTCCCCCCCCCCGGGG
GGGGAGAAAAAAAAAAAAAGGGGGGGGGGGGGGCCCTCCTTTTTTGGGGG
GGGGCGCCCCCCCCCCCCAAAAAAAAAAAAAAAATTTTTTTTTTTTTTTT
TAACCCCCCCGGCCCCAACCGANNANNNNNNNAATTNNNCCCCCCCCCCC
TTATCATTAANNNNNAAAGAAAGAGCGTCCCCCCCGCCCCNNNGAGGNGA
GAAAAAAAAAAAAAATATTTTT

Query= MSMg01no291_m01.b1 MSMg01no291_m01.b1 CHROMAT_FILE:
MSMg01no291_m01.b1 PHD_FILE: MSMg01no291_m01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:26:38 2005
         (687 letters)



>mm_chr12_49224824_49225910
          Length = 1087

 Score = 1230 bits (636), Expect = 0.0
 Identities = 672/684 (98%), Gaps = 4/684 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcactgctgttatcctacaata-tttttttctcttaagaatgaagagcaataactg 63
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 802 gaattcactgctgttatcctacaatattttttttctcttaagaatgaagagcaataactg 743

                                                                       
Query: 64  acttccttcaggtctgatgattcctccaactttgaggacagtaatttctgattcatgaca 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 acttccttcaggtctgatgattcctccaactttgaggacagtaatttctgattcatgaca 683

                                                                       
Query: 124 tacccaagtgattaaaaataaaatgcctccatcctccatcttgtaaagtggttagcatag 183
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 tacccaagtgattaaaaa-aaaatgcctccatcctccatcttgtaaagtggttagcatag 624

                                                                       
Query: 184 cgccacaacttgcagtttatttgctaggcaaaaatgaagactgtgcttagagtgcta-ct 242
            ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct: 623 tgccacaacttgcagtttatttgctaggcaaaaatgaagactgtgcttggagtgctagct 564

                                                                       
Query: 243 ttctctgcaaggaagagatttcagaagcattcctgccatgatgcttcatttcttcctctc 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 563 ttctctgcaaggaagagatttcagaagcattcctgccatgatgcttcatttcttcctttc 504

                                                                       
Query: 303 catcaggatgagagaagaaacagactacctctcctttaatacattaacttgcatattaaa 362
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 503 catcaggatgagagaagaaacagactacctctcctttaatacatcaacttgcatattaaa 444

                                                                       
Query: 363 aaaatgagtgcatttcaaccaaatcattgtcatgtggaagattatttaggacttagatct 422
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 aaaattagtgcatttcaaccaaatcattgtcatgtggaagattatttaggacttagatct 384

                                                                       
Query: 423 tatttttggcttatctccaaatgtcagtgggtgagaagaacataatgtcaggtctccaaa 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tatttttggcttatctccaaatgtcagtgggtgagaagaacataatgtcaggtctccaaa 324

                                                                       
Query: 483 aggtttgtgattactgctattatcctaacaagcaagtttcataagtaagccctatggcaa 542
            ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 323 -ggtttgtgattactgctattatcctaaaaagcaagtttcataagtaagccctatggcaa 265

                                                                       
Query: 543 agaattttgaatcggttagagtgactattatttaaataaacaagtgactgatttttgaag 602
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agaattttgaattggttagagtgactattatttaaataaacaagtgactgatttttgaag 205

                                                                       
Query: 603 taatatttttataattacatttaagtattgaaatttaaaatatgtatgactaggataata 662
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 204 taatatttttataattacatttaagtattgaaattgaaaatatgtatgactaggataata 145

                                   
Query: 663 ataaaattttaatataaaacatta 686
           ||||||||||||||||||||||||
Sbjct: 144 ataaaattttaatataaaacatta 121


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 687
Length of database: 1087
Length adjustment: 10
Effective length of query: 677
Effective length of database: 1077
Effective search space:   729129
Effective search space used:   729129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)