BAC Information

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BAC

Clone NameMSMg01-291N20
Chromosome12 (Build37)
Map Location 35,838,115 - 35,838,418
singlet/doubletsinglet
Overlap genenone
Upstream geneHdac9, 4921508M14Rik, Prps1l1, Snx13
Downstream geneAhr, LOC100043575, LOC629758, LOC100043579, LOC669866, Agr3, Agr2, Tspan13, EG432649, Bzw2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-291N20.T7 (MSMg01no291_n20.b1)MSMg01-291N20.TJ (MSMg01no291_n20.g1)
ACCAG420743AG420744
length737741
length of high quality
(start - end)
313 (45 - 357)288 (77 - 364)
definitionCHROMAT_FILE: MSMg01no291_n20.b1 PHD_FILE: MSMg01no291_n20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:26:46 2005CHROMAT_FILE: MSMg01no291_n20.g1 PHD_FILE: MSMg01no291_n20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:26:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATGATCGAACTTGACTCCATTGCACTCCCTGTACTGACTTAGCGTT
GAACTACACTGAACTGAATAATTTAAACTCAACTGACTGAGTTCATTGCC
TGAACTCAACCCAGCTGAACTGGCTCCTGCTCTCTTCCTGAACTGATCTC
AACAGCCTCCCTTCCCTGTCTGTTCTCCTGAGAGGTGGGCAAATCCTATC
TCTGAATCATTCTACCAAATCTTTCTCTGATTCATCACTTTGTCTGCCCC
TCAATTAGATATCACTTTCAAACATAGCTGCTTCCTTCTACAAACTAATC
TTACCAAACATGATTGTGCCCCGCCACCACAGGTGTGCACTAAGTGTGTC
TGTGTTCCTGCCACCGCACCCATGTTACTGGATTAAAATTCCTCTACACC
CCCACTCCTTGTAACATAATACTGACAAGATAAATCTTCAAATTGACACC
CCTTTATCTATTTATTTTTAATTTTTGTTTTATATGTATGAGTGTATTTC
TGTGCCACATGTACATGCCTAGTTCCTGGGGATGATAGAAGAGGTATCAG
TTCTTTTGGAAATGGAGTTATAGACTGTATGAGCCTCTATGTGGGAGCTG
GGCACTGAACCTCAGTCCTCTCCAAGAGCAGCAAATATTTTTAAGCACTT
AGGCAACTTTCTAGCCCCTCTAGGTCACCCTTTTAAT
TCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAAATTCAGGAAAACACTTTGCCT
ATGACTGTAGTATCACTATAATGGAAACAATTATGGCCAACCAAAGAAGG
AGGTGGTCTTGGAGGTTGTGCAATACAGAGTTCCAGGGGGCTTTCTGTGG
AGTCAGGTATAGCGATGGGTAAAGGCCCACATGTGCTAAGATTTTCCATC
ACCAAACTGAAACTTAAGCTGTTTGCTTCTGACAGTTGACCTTCATAGAG
ATGGAAATGACAGCTAAGGCCAGTGAAGCCAACAAGATTGTTTATATGTT
ATAAAAATGTCCCTTTCTATTGCTTCCCGCCCCCCCTTCCCTCTGCTTTC
TGCTGCCTATAAACCATTTGCCCTCTGCAAAAAAATGACACTCATTCCGA
TTTTGCAGACAGGATGCTGCCTGATTCACAGGTCATTTTAAAAAGGCAAC
TCAATCTTGGAAACTAAATCTGTTGACATTTTGTTCTTTGTATTCATTCT
GCCCATGTAATGTGCTCTGCCGCCATACAAGCATGCTGGTCTATCCAGAC
TTCTTACTGGAGTTCCATTTCCCTTTCACAGTTGGTTTGTCATGACTCAG
GGTCGACCTTCTCTTTTTTCTGGAGAATAGCTCANTCCTAAGTCATCTTT
TGATATTTTTAAATTTTATTTATTTACATTCCAAATGTTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no291_n20.g1 MSMg01no291_n20.g1 CHROMAT_FILE:
MSMg01no291_n20.g1 PHD_FILE: MSMg01no291_n20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:26:46 2005
         (288 letters)



>mm_chr12_35838070_35838757
          Length = 688

 Score =  503 bits (260), Expect = e-147
 Identities = 285/304 (93%), Gaps = 17/304 (5%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaattcaggaaaacactttgcctatgactgtagtatcactataatggaaacaattatgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 aaaattcaggaaaacactttgcctatgactgtagtatcactataatggaaacaattatgg 290

                                                                       
Query: 61  ccaaccaaagaaggaggtggtcttggaggttgtgcaatacagagttccagggggctttct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 ccaaccaaagaaggaggtggtcttggaggttgtgcaatacagagttccagggggctttct 230

                                                                       
Query: 121 gtggagtcaggtatagcgatgggta-----------------aaggcccacatgtgctaa 163
           |||||||||||||||||||||||||                 ||||||||||||||||||
Sbjct: 229 gtggagtcaggtatagcgatgggtaaagggaataaatacagcaaggcccacatgtgctaa 170

                                                                       
Query: 164 gattttccatcaccaaactgaaacttaagctgtttgcttctgacagttgaccttcataga 223
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 gattttccatcaccaaactgaaacttaagctgtttgcttctgacagttgaccttcataga 110

                                                                       
Query: 224 gatggaaatgacagctaaggccagtgaagccaacaagattgtttatatgttataaaaatg 283
           |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 109 gatggaaatgacagctaaggccagtgaagccaacaagattgtttatttcttataaaaatg 50

               
Query: 284 tccc 287
           ||||
Sbjct: 49  tccc 46


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)