BAC Information

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BAC

Clone NameMSMg01-292A05
Chromosome12 (Build37)
Map Location 67,759,122 - 67,759,402
singlet/doubletsinglet
Overlap geneMdga2
Upstream geneLOC100040700, EG238217
Downstream geneLOC100040745
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-292A05.T7 (MSMg01no292_a05.b1)MSMg01-292A05.TJ (MSMg01no292_a05.g1)
ACCAG420853AG420854
length825759
length of high quality
(start - end)
171 (46 - 216)281 (77 - 357)
definitionCHROMAT_FILE: MSMg01no292_a05.b1 PHD_FILE: MSMg01no292_a05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:26:57 2005CHROMAT_FILE: MSMg01no292_a05.g1 PHD_FILE: MSMg01no292_a05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:26:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATGTTGTAACATAATCTCTTGTGCACTGTGTCAAAGCATTCACCT
GTCAATAAAACAGCCTATGAACAATGAGCTGAGTTAGGAAATGGGAGGTA
GAAATTCTGGCAGAGAGATGGCAGGGGGTGGGGGCGGACTGGGGAGTTTC
TGGGATAGAGGAAGGCNTAGGAGGGAGANNNGCACCAAAGAANAAGGGGT
AATTNCCTTCTTTTAATTCTCTTCCACCATACCCTTTCTTCCCCCCTCTC
CCCCCACCACATTTTTTTTTTCCCCCTCTTTTCCCCTTCTTTCTTCCTTC
ATTTTTTTTGTTTCCCCCCCCCCCCCCTCCCCTTTTTCTTTCTTCTTTTT
TTTTATTTTTTTTTGNCCTNCCCCCCCCAAAAAAAATTANATTTTTTGTA
TTTTTCTACTTCTCTCTCTTTTTCCCTTCCCTCTCTTCCCCCCCCTTTTT
CTCCCACTACTCTTCTTCATTTTGTGTCTCGTCTTGTCTCTTCTCTCATC
TCTCCCTTCCAACTCACTCCTTCTACATCTCTTTAATTTCCACTTTTCTC
TCTTCTTCTCTTCTCTCCTTTTTTTCTCCCTCTCTATCTTTATTAACCAT
CCCTCCACTCTTCCTCCCCTTTCCTCCCCTTCAGCTCCCTTACATCCTAT
ATCTCGTCTCTTCTTCTTTTTTGTTCTCACCTCACCTTTATCTTTTTCTC
TTCCTCCCTTTTTCTTCTTTCTCCCTTCCTTTTTTTTTCATCTTCTTTCC
GTTCTTTCACTTCTTTTTTGCCCCT
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTATTTAAATTTCTGTATTTACTTT
AGACATGAGATAAATATATGTTTAGAAATGAAAATGATTTGTGTGTTATT
ATCTAAAAATCAGAATGTTCTTAATATTTTTAATGTTTTTAAAGGGGGAT
GTGTCCTGCCCCCCTAAACTGTATTGTACACAGGAACTATTATTATATTT
GAATTGTATTTGCACACTATCTTGTACATAATACAGTATTTAGATGTTAC
CACCTTTTAAATTACATTTCCTTTCTGGAGATACTGGATTTATCTTCAGT
GCGTCTCATTTTTTTTTACCCCCCCCCCCCCCCCAGAATTCCTAATGGAT
CATCATTTTTGGGCCCCCCCCCCAAAAAAGAGAATCAGNNTAGGTGGGGT
TCATGGATTGCATTGCATATTATTAAGACACACTTTAAGACACAATCATA
TTAAATGCGCTAAAAATATTTTTCCAACACCTTATCATGATCCCGATTAC
TTTTTCCAACACCACCCTGTGAACTTCCCCTGCGTCCCCCTTATTCCCCC
GTTTTTTTTCCCTCCCCCTTCCCTCCCTGCGCCCACCCTTCTCTCATCTC
TATTTCCTCCCCATCTTTCCTTCCTCCCTCTCCCGCTCCCCCTCCTATTA
CTTTTTTCTTTCCCCACCTCTCCCCCTCCTTTTCCCCCCCTCTTTTTCTC
CCTTTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no292_a05.g1 MSMg01no292_a05.g1 CHROMAT_FILE:
MSMg01no292_a05.g1 PHD_FILE: MSMg01no292_a05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:26:57 2005
         (281 letters)



>mm_chr12_67758922_67759603
          Length = 682

 Score =  520 bits (269), Expect = e-152
 Identities = 278/281 (98%), Gaps = 1/281 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatttaaatttctgtatttactttagacatgagataaatatatgtttagaaatgaaaatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 481 tatttaaatttctgtatttactttagacatgagataaatatatgtttagaaatgaaaatt 422

                                                                       
Query: 61  atttgtgtgttattatctaaaaatcagaatgttcttaatatttttaatgtttttaaaggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 atttgtgtgttattatctaaaaatcagaatgttcttaatatttttaatgtttttaaaggg 362

                                                                       
Query: 121 ggatgtgtcctg-cccccctaaactgtattgtacacaggaactattattatatttgaatt 179
           |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 361 ggatgtgtcctgccccccctaaactgttttgtacacaggaactattattatatttgaatt 302

                                                                       
Query: 180 gtatttgcacactatcttgtacataatacagtatttagatgttaccaccttttaaattac 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gtatttgcacactatcttgtacataatacagtatttagatgttaccaccttttaaattac 242

                                                    
Query: 240 atttcctttctggagatactggatttatcttcagtgcgtct 280
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 atttcctttctggagatactggatttatcttcagtgcgtct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 682
Length adjustment: 9
Effective length of query: 272
Effective length of database: 673
Effective search space:   183056
Effective search space used:   183056
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)