BAC Information

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BAC

Clone NameMSMg01-292E07
Chromosome12 (Build37)
Map Location 49,386,966 - 49,387,252
singlet/doubletsinglet
Overlap genenone
Upstream geneEG664891
Downstream geneGm1818, GA_x5J8B7W54VK-284379-285078, Olfr1399-ps1, EG665036
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-292E07.T7 (MSMg01no292_e07.b1)MSMg01-292E07.TJ (MSMg01no292_e07.g1)
ACCAG421034AG421035
length779721
length of high quality
(start - end)
293 (46 - 338)286 (75 - 360)
definitionCHROMAT_FILE: MSMg01no292_e07.b1 PHD_FILE: MSMg01no292_e07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:17 2005CHROMAT_FILE: MSMg01no292_e07.g1 PHD_FILE: MSMg01no292_e07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAATATGACTTCTGGTAGCACTGCAAATCATGGATATCAGCAATAT
TTCAGGAGACAGAACTGATCATACAAGTCTTTCAAGGAGAGTGAATTTAG
TAAACAAATCATTCTACAGCTTGGAAATCTTGGTGTTGCTCAGTAAAGGT
AGTCCTGCAGTTGGGCAGTATGACCAAGTATGTCCAGGGCAGGACCTGAA
TATGTCAGAATCTTCATGTTCTCTCTCTCTCTCTATATATATATATATAT
ATATATATAGATAGATAGATAGATAGATAGATAGATAGAGAGAGAGNGTG
NGNGNGNGNTTTTTTTTTTTTCCCCCCCCCCCCCCCAGTAAAAATTTAAG
TTGGTATTGGTTGTGCGCCCCCCTCTCCCAAAAAAAAAAAAAAAANAATG
GGGGAGAGGCCCCCATAATCCACCAAACGGCGACAAAATCACAAAACCAA
AAATGGCACGCCGCCGACCCCCACCACATAACCGTAATTCTTTAATCTAT
CCTTAACCAAATATTATATATCATTCCATTGAACAAATCTCCCCATTCTG
ATCTCATCTAAATTTAACCCGCATTATTTTCTTTTATAACAATTTTTCCA
CAATATCAACTTCCGTGTAATTTATAATTACTTTACTCCCCATTTTATTT
TATATCTCCACCGTACATTAATAATATAAACCACTATTATTATATACTTA
TTCCCCTTTTCTCACTTGTTATTTTCGTT
ACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACGGAATGGCAGA
GAAGCACCTGAAAAAATGTTCAACATCCTTAACCATCAGGGAAATGCAAA
TCAAAACAACCCTGAGATTCCACCTCACTCCAGTCAGAATGGCTAAGATC
AAAAATTCAGGTGACAGCAGATGTTGGTAAGGTTGTGGAAAAGAGGAACA
CTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATC
AGTCTGGCGGTTCCTTATTTTTTTAGACATAGTACTACCAGAGGATCCCG
CAATACCTTTTTTGTTTATACACCCACACACAGGCCCCAACCGGTAAGAA
GGACACATGCTCCACCACCCCCCATAGAAAACTTATTTATAATAGCCGGA
AGCTGGAAATAACCCAGATGCTCCTCAACAGAGGAATGGATACAGAAAAT
GTGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAAT
TTATGAAATTCCCGGGCAAATGGATGGACCTGGAGGGCATCATCCTGAGT
GAGGTAACCCAATCACAAAGGAACTCACACAATATGTACTCACTGATAAG
CGGATATTATTCCTGATAATTACAATACCCCCGATATAACACACATTTTG
CAAAATATATGTAATTCTTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no292_e07.b1 MSMg01no292_e07.b1 CHROMAT_FILE:
MSMg01no292_e07.b1 PHD_FILE: MSMg01no292_e07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:27:17 2005
         (293 letters)



>mm_chr12_49386762_49387454
          Length = 693

 Score =  501 bits (259), Expect = e-146
 Identities = 281/289 (97%), Gaps = 2/289 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaatatgacttctggtagcactgcaaatcatggatatcagcaatatttcaggaga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaatatgacttctggtagcactgcaaatcatggatatcagcaatatttcaggaga 264

                                                                       
Query: 65  cagaactgatcatacaagtctttcaaggagagtgaatttagtaaacaaatcattctacag 124
           |||||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 265 cagaactgatcacagaagtctttcaaggagagtgaatttagtaaacaaaccattctacag 324

                                                                       
Query: 125 cttggaaatcttggtgttgctcagtaaaggtagtcctgcagttgggcagtatgaccaagt 184
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 325 cttggaaatcttggtgttgctcagtaaaggtagtcctgcagttgggccgtatgaccaagt 384

                                                                       
Query: 185 atgtccagggcaggacctgaatatgtcagaatcttcatgttctctctctctctctatata 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 385 atgtccagggcaggacctgaatatgtcagaatcttcatgttctctctctctctctctcta 444

                                                            
Query: 245 tatatatatatatatatatagatagatagatagatagatagatagatag 293
           ||||||||||||||||||  |||||||||||||||||||||||||||||
Sbjct: 445 tatatatatatatatata--gatagatagatagatagatagatagatag 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)