BAC Information

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BAC

Clone NameMSMg01-293H23
Chromosome12 (Build37)
Map Location 68,270,959 - 68,271,271
singlet/doubletsinglet
Overlap geneMdga2
Upstream geneLOC100040700, EG238217
Downstream geneLOC100040745, LOC100040681
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-293H23.T7 (MSMg01no293_h23.b1)MSMg01-293H23.TJ (MSMg01no293_h23.g1)
ACCAG421935AG421936
length723729
length of high quality
(start - end)
315 (367 - 681)258 (107 - 364)
definitionCHROMAT_FILE: MSMg01no293_h23.b1 PHD_FILE: MSMg01no293_h23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:28:55 2005CHROMAT_FILE: MSMg01no293_h23.g1 PHD_FILE: MSMg01no293_h23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:28:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTACAGAGTTTCCACAATTACTCACTTTGTACCCATATACGGATTGC
TCTGGTTCTTTTGTCTTTTGTCCACTTGAATCCTCCTTAGAAGCCAATCC
AACTACCCACGTCGTGGTTATCTTCTAATCTGTTTCCAACTCTATACTCT
TAAAGTGACCACTTGTTCTTTTTCTTGACATTGTATGCATGCATGAATAT
ATGAATACTCTTGTGAGTGTGTATCAGACAATGGTGCATCTTTATAGGAA
AGAAGACAATGGGGGGCACAGTTGTTTTATCCCTCAAAGGGTCTGGAGAT
CAAACTCAGGTAGTCTGTCTTGTGAGGAAAATGTCTTTCCACTGACTCTA
ACTTCTGATGGAATAAAACATTAACACTTGAAAAGGTAGAAAATAACTAC
TATGTAGGATTATTTTGATCATATTAGTTTCTTCTCCCAATTCCTCCCAT
ATCTTCCCCCACTAATCAACTAATCCACCTAACTCATGTTCTGTTGTTTT
TGTCTCTTAAAACACATGCATACATGCACACAATTCATGCAGGCATGCAT
GCACACACGCAAGCAGTAACGCATTCACGCACAAAACAAAACATGGAATC
AAATTTATGTTGGTCAAATATCCTTGAGAATGTGGCCTACCTTGGAGAGT
GCTTGATATATTCCATGACACTC
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCA
GAGAAGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTTGCGAGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAA
ATCAGTCTGGCGGTTCCTCAGAAAACTGGACATAATACTACCGGAGGATC
CAGCAATATCGATCTTTATACCTCCNANACCTTCCCAAGCTTCAGTAATT
AAACACAGAGAAAAGACAAAGCCCTGAACAATAAAAATCACCAATTTTTA
TGACGTTGTTAAAAAAAATCACTAATTTTAAAATTAAACTTAGATATATA
TATGTATATATGTATATATATATATATATATATATATATATACACACACA
CACACATAATCACTGCTTTCAATTATAAATAATAGCAGATAAACACATCC
AGTTAAAATCATCTATGATTTTTTAAAGCATATAAATACTAAAAATTCTA
TTAAACAAAAGCTTGAATGCACAATCCATGAATAAGTTATAGTCAACAAT
ATTATGAACTGTTGGTAACATCACTAGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no293_h23.b1 MSMg01no293_h23.b1 CHROMAT_FILE:
MSMg01no293_h23.b1 PHD_FILE: MSMg01no293_h23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:28:55 2005
         (315 letters)



>mm_chr12_68270757_68271471
          Length = 715

 Score =  582 bits (301), Expect = e-171
 Identities = 310/313 (99%)
 Strand = Plus / Plus

                                                                       
Query: 3   cttgtgaggaaaatgtctttccactgactctaacttctgatggaataaaacattaacact 62
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 203 cttgtgaggaaaatgtctttccactgactctaacttctgatggaataaaatattaacact 262

                                                                       
Query: 63  tgaaaaggtagaaaataactactatgtaggattattttgatcatattagtttcttctccc 122
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tgaaaaggtagaaaagaactactatgtaggattattttgatcatattagtttcttctccc 322

                                                                       
Query: 123 aattcctcccatatcttcccccactaatcaactaatccacctaactcatgttctgttgtt 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aattcctcccatatcttcccccactaatcaactaatccacctaactcatgttctgttgtt 382

                                                                       
Query: 183 tttgtctcttaaaacacatgcatacatgcacacaattcatgcaggcatgcatgcacacac 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tttgtctcttaaaacacatgcatacatgcacacaattcatgcaggcatgcatgcacacac 442

                                                                       
Query: 243 gcaagcagtaacgcattcacgcacaaaacaaaacatggaatcaaatttatgttggtcaaa 302
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gcaagcagtaatgcattcacgcacaaaacaaaacatggaatcaaatttatgttggtcaaa 502

                        
Query: 303 tatccttgagaat 315
           |||||||||||||
Sbjct: 503 tatccttgagaat 515


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)