Query= MSMg01no293_k04.b1 MSMg01no293_k04.b1 CHROMAT_FILE:
MSMg01no293_k04.b1 PHD_FILE: MSMg01no293_k04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:29:06 2005
(330 letters)
>mm_chr12_54734670_54735399
Length = 730
Score = 545 bits (282), Expect = e-159
Identities = 310/326 (95%), Gaps = 11/326 (3%)
Strand = Plus / Minus
Query: 5 gaattccaggtaggtgttgcagcatccgtagctaataaatgataaaatggagtttgccca 64
|||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 556 gaattccaggtaggtgttgcagcatc-----------aatgataaaatggagtttgccca 508
Query: 65 atgatatggggattcctatatggactactcatgtcaggtccttacatgatcacttactgg 124
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct: 507 atgatatggggattcctatatggactactcatgtcaggtcctcacatgatcacttaccgg 448
Query: 125 gtggttagcacttgatgacagaatctaccctttcctgcaacaatgggattcttaatgcag 184
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 447 gtggttagcacttgatgacagaatctaccctttcctgcgacaatgggattcttaatgcag 388
Query: 185 tggcctaagcagtatttggagtgatagaacctgtgggtagctttcatcaccaaagcttat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 tggcctaagcagtatttggagtgatagaacctgtgggtagctttcatcaccaaagcttat 328
Query: 245 gagaatatatcttccggaaaagacaggcgtgacccacagctgggctgagtctcagggagt 304
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 327 gagaatatatcttccggaaaagacaggcatgacccacagctgggctgagtctcagggagt 268
Query: 305 ttgggacatgatgggtgccttaagag 330
|||||||||||||||| |||||||||
Sbjct: 267 ttgggacatgatgggtaccttaagag 242
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 730
Length adjustment: 9
Effective length of query: 321
Effective length of database: 721
Effective search space: 231441
Effective search space used: 231441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no293_k04.g1 MSMg01no293_k04.g1 CHROMAT_FILE:
MSMg01no293_k04.g1 PHD_FILE: MSMg01no293_k04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:29:06 2005
(291 letters)
>mm_chr12_54567613_54568304
Length = 692
Score = 487 bits (252), Expect = e-142
Identities = 282/292 (96%), Gaps = 1/292 (0%)
Strand = Plus / Plus
Query: 1 actgatttccttggtcctctctgacccctggctcttacagtctttctgtcccctatttca 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actgatttgcttggtcctctctgacccctggctcttacagtctttctgtcccctatttca 260
Query: 61 agaaggtcctcgagactggggtgaagcacagatacagacggggcatttgtggtgaagtat 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 261 agaaggtcctcgagactggggtgaagcacagatacagacggggcatttgtggtgaaatat 320
Query: 121 ccatggaaactctttgtacttggaccactcatgggtttctatggcagtgctttggaattt 180
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 321 ccatggacactctttgtacttggacaactcatgggtttctatggcagtgctttggaattt 380
Query: 181 tcaacattctcttaaagg-gcccctcactgttgcctacgtttcccagcatgtttttaagg 239
||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcaacattcccttaaaggtgcacctcactgttgcctacgtttcccagcatgtttttaagg 440
Query: 240 tattaccaaaggaagcaatattctcagcattatatattttagggatagttta 291
||||||||||||||||||||||| |||||||||||||||||| || ||||||
Sbjct: 441 tattaccaaaggaagcaatattcacagcattatatattttagagacagttta 492
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 692
Length adjustment: 9
Effective length of query: 282
Effective length of database: 683
Effective search space: 192606
Effective search space used: 192606
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
