Query= MSMg01no293_n17.b1 MSMg01no293_n17.b1 CHROMAT_FILE:
MSMg01no293_n17.b1 PHD_FILE: MSMg01no293_n17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:29:23 2005
(716 letters)
>mm_chr12_14651552_14652664
Length = 1113
Score = 1328 bits (687), Expect = 0.0
Identities = 705/712 (99%), Gaps = 3/712 (0%)
Strand = Plus / Plus
Query: 5 gaattccactgaggccctgggatgccagagttagagacacactgtctctcctctgggctc 64
|||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 205 gaattccactgaggccctgggatgccag-g--agagacacactgtctctcctctgggctc 261
Query: 65 atgagattattttgttcagacactagttattacagggagtagctgggccaactgctttta 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 atgagattattttgttcagacactagttattacagggagtagctgggccaactgctttta 321
Query: 125 cctgcagttacatagtgagcatacaagattttatatatctaactgtctctctatatctat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 cctgcagttacatagtgagcatacaagattttatatatctaactgtctctctatatctat 381
Query: 185 attcagaaaagaccaaaaattcctacaaaaactaatttcttgacaataaaattcctcctg 244
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 382 attcagaaaagaccaaaaattcctacaaaaactaatttcttgacgataaaattcctcctg 441
Query: 245 ggttagcataaatagaattaactaccaaattagctaaattctggttcaaagtcatggttc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ggttagcataaatagaattaactaccaaattagctaaattctggttcaaagtcatggttc 501
Query: 305 aaatgagcatttaataagctcgctctcttttcagaaacgactcattgatttttttttccc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 aaatgagcatttaataagctcgctctcttttcagaaacgactcattgatttttttttccc 561
Query: 365 cagaatgagattaagtattcattttaaaaacataactaaaccagaaacaagcattctctt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 562 cagaatgagattaagtattcattttaaaaacataactaaaccagaaacaagcattttctt 621
Query: 425 tttaagttactgtgtaaactatgtaacaaaactatattggaaatcaaaacagcattaaaa 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 tttaagttactgtgtaaactatgtaacaaaactatattggaaatcaaaacagcattaaaa 681
Query: 485 tgtcaactatatctagccaatcttattagaccaaataattgtgttttacaatggtctgaa 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 tgtcaactatatctagccaatcttattagaccaaataattgtgttttacaatggtctgaa 741
Query: 545 aacttgtaggatttaaagagaaaaactagacaaagaatatttagtcttcatctttgttaa 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 aacttgtaggatttaaagagaaaaactagacaaagaatatttagtcttcatctttgttaa 801
Query: 605 gcatttcaactatctgaagagaatctgaatttaattgaaaccccaaaataatcatatatt 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 gcatttcaactatctgaagagaatctgaatttaattgaaaccccaaaataatcatatatt 861
Query: 665 atattatatgtcatanaaagtaacatgcagcaattcctatgaaatcataatt 716
||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct: 862 atattatatgtcataaaaagtaacatgcagcaatttctatgaaatcataatt 913
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 716
Length of database: 1113
Length adjustment: 10
Effective length of query: 706
Effective length of database: 1103
Effective search space: 778718
Effective search space used: 778718
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no293_n17.g1 MSMg01no293_n17.g1 CHROMAT_FILE:
MSMg01no293_n17.g1 PHD_FILE: MSMg01no293_n17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:29:24 2005
(686 letters)
>mm_chr12_14806853_14807938
Length = 1086
Score = 986 bits (510), Expect = 0.0
Identities = 530/548 (96%), Gaps = 18/548 (3%)
Strand = Plus / Minus
Query: 1 tccccagcatttgaagaaatctaacttggtgtagcccccaagtttttcagatcaaaagta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 tccccagcatttgaagaaatctaacttggtgtagcccccaagtttttcagatcaaaagta 489
Query: 61 cgaattgtgagctaaggagacatcacaattggtaaagtgtttgcctcacaagcatagtca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 cgaattgtgagctaaggagacatcacaattggtaaagtgtttgcctcacaagcatagtca 429
Query: 121 attctcagaatgcttgtaaatcttcttggcacagaaacacagtagtaattctattgttgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 attctcagaatgcttgtaaatcttcttggcacagaaacacagtagtaattctattgttgg 369
Query: 181 tgtagcaaagactggggaagccttgctctctactgacaagctggcttgacccaactgaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 tgtagcaaagactggggaagccttgctctctactgacaagctggcttgacccaactgaaa 309
Query: 241 agctcctggcaagctcctggccaattcagagatcctgtcccaaaaccctaaactaaagtc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 agctcctggcaagctcctggccaattcagagatcctgtcccaaaaccctaaactaaagtc 249
Query: 301 ttgcaaatgacactagatgttatgtggccatgtggccttcatatagtt------------ 348
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ttgcaaatgacactagatgttatgtggccatgtggccttcatatagttacacacacacac 189
Query: 349 ------acacacacacacacacacacacacacacacacacacacacacactgcaatatat 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 acacacacacacacacacacacacacacacacacacacacacacacacactgcaatatat 129
Query: 403 acagttacataaagcacagattcaactcactctcatacaaaataagtctgaaattaattg 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 acagttacataaagcacagattcaactcactctcatacaaaataagtctgaaattaattg 69
Query: 463 acttctgttaccttagttgtgacagccaactgatggatgaatacaactcgcttttgctag 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 acttctgttaccttagttgtgacagccaactgatggatgaatacaactcgcttttgctag 9
Query: 523 cacatagt 530
||||||||
Sbjct: 8 cacatagt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 79
Number of extensions: 26
Number of successful extensions: 26
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1086
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1076
Effective search space: 727376
Effective search space used: 727376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
