BAC Information

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BAC

Clone NameMSMg01-293O04
Chromosome12 (Build37)
Map Location 85,140,288 - 85,298,721
singlet/doubletdoublet
Overlap geneNumb, LOC100042325, 2410016O06Rik
Upstream geneRgs6, Dpf3, Wdr21, Zfyve1, LOC626950, Rbm25, Psen1, Papln
Downstream geneAcot2, Acot1, Acot4, Acot3, Acot5, LOC666963, Acot6, Dnalc1, Pnma1, C130039O16Rik, EG432676, Zadh1, Zfp410, 9830169C18Rik, Coq6, Entpd5, 2900006K08Rik, Rnf113a2, Aldh6a1, Lin52, Chx10, Abcd4, 7420416P09Rik, Tmem90a, Npc2, Isca2, Ltbp2, 1110018G07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-293O04.T7 (MSMg01no293_o04.b1)MSMg01-293O04.TJ (MSMg01no293_o04.g1)
ACCAG422211AG422212
length735765
length of high quality
(start - end)
309 (50 - 358)288 (69 - 356)
definitionCHROMAT_FILE: MSMg01no293_o04.b1 PHD_FILE: MSMg01no293_o04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:29:25 2005CHROMAT_FILE: MSMg01no293_o04.g1 PHD_FILE: MSMg01no293_o04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:29:25 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,298,416 - 85,298,721)(85,140,288 - 85,140,575)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
AGGCAGCTTGTTTGGCGGCAGGTGCCTTGCAGATCCGTGACCGGATGGTA
AGTCAAGGAAGCGGACTGTCATCATATGGGATGGACCTCGAGAGAGCTTC
CCTGTCTCTGGTGCCTGGTATACTCACTCTTCTGTGGGAGGTGGGATGAG
CAGTCAGTCATATCATCAGCAAGGAGCATTGAGCTCTTAATGAACTCGAA
CTTCAAGCCATAGCACGCTACGCTCTCAATTCTGCTCTCTTCTCAGTTAA
CTAACTAGCTTCTACTGCTGAGAGGTTTTAGGGTTAATCCCAACGGATGG
AATTTTTATTCTTTACCCCCCCCCCCCTGGACACAGGTATTCAAAAGAAG
AATATGCCCCCCTCTTTTTAAAACTTGTACTTGGGAGATAAGGCAAGAGG
CAGGAGTTTCAAGAATTTGAGGTGAGGGGTTGAAGAAATGGCTTTTTAAT
TAAGAGCACTGGGTGTTTTCCCATAGGACCGGGCTTGATTCCTACCACCT
ACATGGTAGCTCACAACCACATCCTAACCAGTTTCAGGGTATCCTACGCC
GCTTTCTGGCCTCTGTAGGCTCCGATTTGTATAGCCTGACCTCCAGGCTT
AACACCCTATTACTCTTATAATACATTTGATGTTGAACCTAAGCGTCAAG
CTACCTAGTGATTGGTCTCATAAATTACAATGCCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXATGCCAAATGATGAAAAGCGGACATCTTAGAC
AAGAGAACAAAAGCCCAAAGATGTGACTGACAGGGAAATGAGGGATGCTG
GCAAGCTCAGGATGCCAACTTCAGTTCAGGAGAAGCATGCTCACAGGATT
AGTTTTAAAGAGAAAAACTGAGGTCAGAGGTCACCTACCTTGTAACACAG
GAGACTGTGGTGCCACCAATGCCACTGGTTTGGTCATTGGGGCGGAGGAG
AAGGGGTCCTCAGAGGGTGTGTTGAAGGCACTGGTGATCTGGGAACACAA
GGAGCTGTTGTTCNTCCCCCCCCCCCCCCACCTCGGTTACTGCAAGGCAA
AAGGAAATGTTTCCCCCCCCCCAAAGAGAAAAAAACTGAGGTGGGGGGGG
GCGGTGTGGTCTGCCAGTTCTCACTTTAGCTCTTTCCCTTGTCGAAGGAC
AAGTCTCAACTGTCAGGCTACACACTTCTGTTTCTGTTAAATGAATCCCT
CACTTTCTCTCACTGGATAGCATACTAACATCAGTTAACTCATGCACTAA
GATCATTTTTTCTCCGCAATTTCCCTATATCTATCTCCCCTTTTGACACT
TTTGCTTGGTAACTCGGCCGCCTTCTTTTTTTCCTCAATTTCTGTCCATC
ATTGTTGTGCCTTCCTTTGCCCCGTCTGTTCCCCTTCTCTGCCATAATTC
CCTCGTTTACTTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no293_o04.b1 MSMg01no293_o04.b1 CHROMAT_FILE:
MSMg01no293_o04.b1 PHD_FILE: MSMg01no293_o04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:29:25 2005
         (309 letters)



>mm_chr12_85298216_85298924
          Length = 709

 Score =  569 bits (294), Expect = e-166
 Identities = 303/306 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggcagcttgtttggcggcaggtgccttgcagatccgtgaccggatggtaagtcaagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 caggcagcttgtttggcggcaggtgccttgcagatccgtgaccggatggtaagtcaagga 447

                                                                       
Query: 61  agcggactgtcatcatatgggatggacctcgagagagcttccctgtctctggtgcctggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 agcggactgtcatcatatgggatggacctcgagagagcttccctgtctctggtgcctggt 387

                                                                       
Query: 121 atactcactcttctgtgggaggtgggatgagcagtcagtcatatcatcagcaaggagcat 180
           | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 386 acactcactcttctgtgggaggtgggatgagcagtcaatcatatcatcagcaaggagcat 327

                                                                       
Query: 181 tgagctcttaatgaactcgaacttcaagccatagcacgctacgctctcaattctgctctc 240
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 326 tgagctcttaatgaactcgaacttcaagtcatagcacgctacgctctcaattctgctctc 267

                                                                       
Query: 241 ttctcagttaactaactagcttctactgctgagaggttttagggttaatcccaacggatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ttctcagttaactaactagcttctactgctgagaggttttagggttaatcccaacggatg 207

                 
Query: 301 gaattt 306
           ||||||
Sbjct: 206 gaattt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 709
Length adjustment: 9
Effective length of query: 300
Effective length of database: 700
Effective search space:   210000
Effective search space used:   210000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no293_o04.g1 MSMg01no293_o04.g1 CHROMAT_FILE:
MSMg01no293_o04.g1 PHD_FILE: MSMg01no293_o04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:29:25 2005
         (288 letters)



>mm_chr12_85140088_85140775
          Length = 688

 Score =  518 bits (268), Expect = e-151
 Identities = 283/288 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgccaaatgatgaaaagcggacatcttagacaagagaacaaaagcccaaagatgtgact 60
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 201 atgccaaatgatgaaaagcggacagcttagacaagagaacaaaagcccaaagatgtgact 260

                                                                       
Query: 61  gacagggaaatgagggatgctggcaagctcaggatgccaacttcagttcaggagaagcat 120
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gacagggaaacgagggatgctggcaagctcaggatgccaacttcagttcaggagaagcat 320

                                                                       
Query: 121 gctcacaggattagttttaaagagaaaaactgaggtcagaggtcacctaccttgtaacac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctcacaggattagttttaaagagaaaaactgaggtcagaggtcacctaccttgtaacac 380

                                                                       
Query: 181 aggagactgtggtgccaccaatgccactggtttggtcattggggcggaggagaaggggtc 240
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggagactgtggtgccaccaatgtcactggtttggtcattggggcggaggagaaggggtc 440

                                                           
Query: 241 ctcagagggtgtgttgaaggcactggtgatctgggaacacaaggagct 288
           ||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct: 441 ctcagagggcgtgctgaaggcactggtgatctgggaacacaaggagct 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)