BAC Information

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BAC

Clone NameMSMg01-294C15
Chromosome12 (Build37)
Map Location 73,756,298 - 73,756,530
singlet/doubletsinglet
Overlap geneDhrs7
Upstream geneDaam1, LOC666213, LOC666220, Gpr135, LOC100041239, 2810055F11Rik, 1200003C05Rik, 4930403N07Rik, Rtn1, Lrrc9, 1810048J11Rik, LOC209183, LOC100041323
Downstream geneLOC100041157, 5033425G24Rik, Ppm1a, Six6os1, Six6, LOC100041234, Six1, Six4, Mnat1, Trmt5, Slc38a6, EG666356, Tmem30b, 2210039B01Rik, Prkch
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-294C15.T7 (MSMg01no294_c15.b1)MSMg01-294C15.TJ (MSMg01no294_c15.g1)
ACCAG422408AG422409
length741739
length of high quality
(start - end)
234 (125 - 358)279 (430 - 708)
definitionCHROMAT_FILE: MSMg01no294_c15.b1 PHD_FILE: MSMg01no294_c15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:29:47 2005CHROMAT_FILE: MSMg01no294_c15.g1 PHD_FILE: MSMg01no294_c15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:29:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTG
TATGATATCGAAGAAACCCACGACTCGCTCGGAAGGAGAGTTCCAGTGGC
GTGTTCCACCTTTGGCCCAGTGGCTCAGTGCTGAAGGCCACCATGCCGTC
ACAGAAATGGCCGCTGTAGTTCAGCAGGACCCACCTCTGCCATGCAGAAC
CAACAGCGCACAGGGATGAAGGCTGGCATCTTGGATGCTCTCCTCAGATT
TAGTAAGGTCCTGTCAATCAACCTCCTGTAAAGACAGTCCCATCTCAGAC
AGGCAGATGCAGTAAAAACAAAAACAGCAACAACACAAAAACACAGGTGA
GCTGTCTTTTTTGCCCTCCACCCACTCTGCTTTATTCTTGGGTTGGATCC
TCTGGCAAACTGCCCACAGTTACAGCAAAAGTATAACAGAAGTTATAGCA
GGACTTAAGTAGAAGAAATGCTGAGACCAGGAGGCTTTTCTATCGTTCTG
GAACTGTCTCTTCTACCACAGGCTGACCTTGAGCTTCAAATCCTGCCTAT
ATCTCCCAAGAGCTGGCCTCACAGGCACTCACCACCATGTCCCAGGAAGC
CTTTTAAAAAACACGTTTCCTTCTCATATTCCTAGAAGTTACAGTAAATT
TTTTAAAAAAATATTTATTTATTTTATGTCTGGGCACCACATGCATGCAG
TACCCATGGAAACCAGAAGAGGGCATTGGATTCCGTGGTAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCATCTAATAGCAGTATTTATGGCAGCAAAGAA
GATAACAGCAAAGAAGACTACTAAAATATACCAGGAACAAATAATGAGAA
ACTGGACCAGAAGGAGGTGACTTTAAAAATAGAAAGATGGCTGAGCAGTG
ATGATGCATGCCTTTAATCCTAGCACTCCAGCAGATCCTAGCAGAGGCAG
GCAGATCTCTGTGAGTTTGAGGCCAGCCTAGTCTATATAGTAAGTTCCAA
GACAGCCAGGGCTATATAGAGCAGCCCCATATCAAAAAACAAACAGAAAA
ACAAATCTAATGATTACACCAAACAAACCAGAAAACTGAGACTTATGAAA
AGCAATGGGGCCCCTTCAATCACACAAAAAAAAATGTGTCTGTGCTCATC
TAAGCTTGTAAGCTAAGCAGGGTTCGGCCGAGTTGGTATTGCACAGGAGA
AATTCTGGGAGAAACTGACAGAATTTATCAGCCATACACAGCAAACATGA
AAAGATACCTACTGCTGGGGTCCAGGAATCCCCCCACAAACCACTCAGAC
CCTGGTCTCAGTCAAACAAGAACATTGAACACCCACACCAAGACTGATCT
ATCAGGGCATCAAGGGTATAGCATAGACTCAGGAGCTAAGACTGAGACCT
TGAATGTTTCTCAGGGCCAGTTTATAAAGGCTAACACTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no294_c15.b1 MSMg01no294_c15.b1 CHROMAT_FILE:
MSMg01no294_c15.b1 PHD_FILE: MSMg01no294_c15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:29:47 2005
         (234 letters)



>mm_chr12_73756098_73756731
          Length = 634

 Score =  435 bits (225), Expect = e-126
 Identities = 231/233 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcagtgctgaaggccaccatgccgtcacagaaatggccgctgtagttcagcaggacccac 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 433 tcagtgctgaaggccaccatgccgtcacagaaatggccactgtagttcagcaggacccac 374

                                                                       
Query: 61  ctctgccatgcagaaccaacagcgcacagggatgaaggctggcatcttggatgctctcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ctctgccatgcagaaccaacagcgcacagggatgaaggctggcatcttggatgctctcct 314

                                                                       
Query: 121 cagatttagtaaggtcctgtcaatcaacctcctgtaaagacagtcccatctcagacaggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 cagatttagtaaggtcctgtcaatcaacctcctgtaaagacagtcccatctcagacaggc 254

                                                                
Query: 181 agatgcagtaaaaacaaaaacagcaacaacacaaaaacacaggtgagctgtct 233
           |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 253 agatgcagtaaaaacaaaaatagcaacaacacaaaaacacaggtgagctgtct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)