BAC Information

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BAC

Clone NameMSMg01-294M14
Chromosome12 (Build37)
Map Location 116,254,435 - 116,254,722
singlet/doubletsinglet
Overlap geneIgh
Upstream geneIghv3-2, Ighv11-2, Ighv14-3, EG629812, Ighv6-2, Ighv9-1, Ighv12-1, EG629818, Ighv12-2, Ighv9-3, Ighv7-3, Ighv15-1, Ighv14-4, EG668438, Ighv7-4, EG629833, EG633457, Ighv13-1, Ighv3-6, EG636260, Ighv3-7, Ighv5-21, Ighv3-8, Ighv8-1, Ighv1-1, Ighv13-2, EG435321, Ighv6-3, EG628398, EG639510, Ighv6-6, EG432701, EG629849, Ighv1-2, Ighv10-1, Ighv1-3, Ighv1-4, Ighv10-2, EG668469, EG380809, Ighv1-6, EG668474, Ighv10-4, Ighv1-8, Ighv15-2, Ighv1-9, Ighv1-10, Ighv1-11, EG629860, Ighv1-13, Ighv1-14, Ighv1-15, EG629866, Ighv1-17-1, Ighv1-17, Ighv1-18, EG668493, Ighv1-19, EG668497, Ighv1-21-1, Ighv1-21, Ighv1-22, Ighv1-23, Ighv1-24, Ighv1-25, Ighv1-26, Ighv1-27, Ighv1-28, Ighv1-29, Ighv1-30, Ighv1-31, Ighv1-32, Ighv1-33, Ighv1-34, EG668515, Ighv1-36, Ighv1-37, Ighv1-38, Ighv1-39, Ighv1-40, Ighv1-41, EG629906, EG629908, Ighv1-44, Ighv1-45, Ighv1-46, Ighv1-47, Ighv8-3
Downstream geneEG629919, Ighv1-48, Ighv1-49, EG640506, Ighv1-50, Ighv1-51, Ighv1-52, Ighv1-53, EG629930, EG668534, EG211331, Ighv1-55, EG634662, Ighv1-56, EG629936, Ighv8-7, Ighv1-57, Ighv8-8, Ighv1-58, EG432708, Ighv1-60, Ighv1-61, Ighv1-62, EG668544, EG238448, EG668549, EG432709, EG668552, Ighv1-63, Ighv1-64, Ighv8-10, Ighv1-65, EG668554, EG636462, LOC217924, Ighv1-66, EG435328, Ighv1-68, LOC435329, EG668563, Ighv1-69, Ighv8-12, LOC619863, EG638634, EG619886, Ighv1-72, EG668575, EG668577, EG668582, Ighv1-75, Ighv1-77, Ighv1-78, GA_x5J8B7W27DS-1519-2216, Ighv1-79, LOC668586, Ighv1-80, Ighv1-81, Olfr241-ps1, Ighv1-83, EG434609, LOC668595, EG668597, EG668599
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-294M14.T7 (MSMg01no294_m14.b1)MSMg01-294M14.TJ (MSMg01no294_m14.g1)
ACCAG422869AG422870
length740741
length of high quality
(start - end)
316 (39 - 354)288 (68 - 355)
definitionCHROMAT_FILE: MSMg01no294_m14.b1 PHD_FILE: MSMg01no294_m14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:32 2005CHROMAT_FILE: MSMg01no294_m14.g1 PHD_FILE: MSMg01no294_m14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAC
CTTGCTAAACTACAAACTCTGTATCTTCATGGCTGATGTCAAAGCAGTCT
TCAGATCTCCAACTCCCTTTTCATCTTATTTGAGGGCAACATATTTCTTT
CTCCTAGGCTGGCTCCACTTTGTTACCAGCTTTCCTCAGCAGATAACCAA
TGGCTCTGTCATCTCAAACATCTTGGAGTCTCCTAGGCTACTTCAGTGTT
ACAACTTCATGTTTCAATATTTGGGATGCACACATGATCTTCTGTGCTCC
TAGTAAGGACTGGTGTTATTTCTCCAGCTCTGCCCTCTGTAGAACTCTTA
GCTCTTGTTTATCTTCCCCACTGCTACCGCTATTCTCAGTGATCATTTTG
TTGTAACCACATCTCTCATACAAAGGAGACTTCTGCTGCGGCTAGACTAC
ACCAATAAGCTCTCACAGGATCTCTTCATGGTGCCATTCCTCAACTTCTT
TGCATGACCCTTTAAGACCTGGGCCATCAACTGAAATTGAGGCTTTTCTT
TCACAAATGTTCTTCCATAGCCTGTCACAGCACCAAGCCTCAGCTGTTCT
TCATGAAGCCTTCATGTCTTCCAACACAGAAATACCTGGATGACTCTCAC
ACATTACAAAGTACACGTGTTGGCAGGAGGTACTACTTTGTTTATTTTTG
AAACACATTTTTTTGGGCTCCTCGAAATCACTTTCCAGAG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAACATGGTATCAATGGAAGAAGATAAACATAAA
ATAAGCTTTTAAAAAAACTGATCTAAATAGTGTCCTGCCTCAACTGAAGG
GGAAAAGGTTTCTAGATTACCTGATGATAATAATTTATGTTTGGTGCAGG
ATGATAGATATGGATCTATTTGCATTCTTCTACACACCAACATCCTGTAA
GACTAGCACCATTTATCAAAGATGCTGTCATTCTTCAAGTGTATATTTCT
AGTTTCTTTACCAAGAATCAGGTGTCTATAGTTATTTGGATGTAATCTTA
TGTCTTTTTATTCCTCCCACTGCTCAACCAGCCCAATTTTATACAAATAG
CATGCTACATGTTTTACTATAAAACATAGTAGTACAACATCCTTACGATA
CATACAATTAACAATTTCCTTTCCAAAATGTTATATAGAAAAAAAATCTC
ATCCAAATGACCAAAAGTAAATATAATTCAGAAATGCTTGAATGATTATT
GAAGCATTACCAAGATTAATAAATCATGGAAATAAACCTTATTCTATCAA
CAGAGATTTGCCTCAAGAAGTGATATATAACACAACAGACGTTTTTTATC
AGAAAAGAACAGGAATTTAGTTCAATTTTAGGAAAATGGATGCATCTGGA
GGTAATTGTATTATTTAAGACCACTTTATAAACAGACCTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no294_m14.g1 MSMg01no294_m14.g1 CHROMAT_FILE:
MSMg01no294_m14.g1 PHD_FILE: MSMg01no294_m14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:32 2005
         (288 letters)



>mm_chr12_116254235_116254922
          Length = 688

 Score =  557 bits (288), Expect = e-163
 Identities = 288/288 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacatggtatcaatggaagaagataaacataaaataagcttttaaaaaaactgatctaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacatggtatcaatggaagaagataaacataaaataagcttttaaaaaaactgatctaaa 260

                                                                       
Query: 61  tagtgtcctgcctcaactgaaggggaaaaggtttctagattacctgatgataataattta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagtgtcctgcctcaactgaaggggaaaaggtttctagattacctgatgataataattta 320

                                                                       
Query: 121 tgtttggtgcaggatgatagatatggatctatttgcattcttctacacaccaacatcctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtttggtgcaggatgatagatatggatctatttgcattcttctacacaccaacatcctg 380

                                                                       
Query: 181 taagactagcaccatttatcaaagatgctgtcattcttcaagtgtatatttctagtttct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taagactagcaccatttatcaaagatgctgtcattcttcaagtgtatatttctagtttct 440

                                                           
Query: 241 ttaccaagaatcaggtgtctatagttatttggatgtaatcttatgtct 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttaccaagaatcaggtgtctatagttatttggatgtaatcttatgtct 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)