Query= MSMg01no294_o14.b1 MSMg01no294_o14.b1 CHROMAT_FILE:
MSMg01no294_o14.b1 PHD_FILE: MSMg01no294_o14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:41 2005
(318 letters)
>mm_chr12_50293294_50294010
Length = 717
Score = 449 bits (232), Expect = e-130
Identities = 254/268 (94%), Gaps = 12/268 (4%)
Strand = Plus / Minus
Query: 60 tgttgggttgtttcttgtttgttatgaataataagtgtagttatattcttattgaaatcc 119
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 421 tgttgggttgtttcttgtttgttatgaataataagtgtaggtatattcttattgaaatcc 362
Query: 120 ctgggtgttgttagaatttttatttttgtatactgctaagttattagcgtcacaaattgt 179
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 361 ctgggtgttgttagaattttta-ttttgtatactgctaagttattagcgtcacaaattgt 303
Query: 180 ggttttatcctaaaggattgagacagaaaatttgtaacttt-----------gctaagac 228
||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 302 ggttttaccctaaaggattgagacagaaaatttgtaactttgcaggattttagctaagac 243
Query: 229 gatagtcatcttctcagaggggaattaaattgctagtgttttttttctcaaatgtgatat 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 gatagtcatcttctcagaggggaattaaattgctagtgttttttttctcaaatgtgatat 183
Query: 289 tagatactgtggcattttgaacagagaa 316
||||||||||||||||||||||||||||
Sbjct: 182 tagatactgtggcattttgaacagagaa 155
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 717
Length adjustment: 9
Effective length of query: 309
Effective length of database: 708
Effective search space: 218772
Effective search space used: 218772
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no294_o14.g1 MSMg01no294_o14.g1 CHROMAT_FILE:
MSMg01no294_o14.g1 PHD_FILE: MSMg01no294_o14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:41 2005
(288 letters)
>mm_chr12_50117003_50117690
Length = 688
Score = 437 bits (226), Expect = e-127
Identities = 271/288 (94%), Gaps = 4/288 (1%)
Strand = Plus / Plus
Query: 1 ctcaggtttagcattctgaagcaggctataggtaaattgcacgtacacacacacacacac 60
|||||||||||||||||||| |||||||||||| |||| | |||||||||||||||||||
Sbjct: 197 ctcaggtttagcattctgaatcaggctataggtgaattacgcgtacacacacacacacac 256
Query: 61 acgcacacacat----attcacaaaaaaacaacaaaaccttagaaattgtaccatcagaa 116
|| ||||||||| | |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 257 acacacacacatacacactcacaaaacaacaacaaaaccttagaaattgtaccatcagaa 316
Query: 117 caatggactgaaactgatacagaggaaacaaacatcagcaattgctcattatttcatata 176
|||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 caatggcctgaaactgttacagaggaaacaaacatcagcaattgctcattatttcatata 376
Query: 177 taattcagatatatatttaaaatatgtaaacttctaatatttaaaatatatacatttctt 236
||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |||
Sbjct: 377 taattcagatatatatttaaaatatatacacttctaatatttaaaatatatacattgctt 436
Query: 237 gttaaaagtaacagattaaaaggaaggatgctttattagtaatttgct 284
||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 437 gttaaaagtaacagattcaaaggaaggatgctttattagtaatttgct 484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space: 189441
Effective search space used: 189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
