TTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTATTTAATTATTTCTTTAAACTTTTACCCCTAGATGCTAGTACA
AAAACATAAAACCACTTGTACATCTGGCAGACGCAATTATTTATAGATGG
TGTCGGAATCTATACTTGTGAAAACAAAGTGAATGTCCCCTCATGCATGT
GCAAACAAAGGCCATGTGCAGTAAATTATTCTTGTTTTGCAGTTACAATA
TTTTGTGTGCTATTTTGTTTTGTTTCATTTCTAAGCATCCATTCCTTGGT
CATAAGTAATGTTAATGTTTTTCAAAAGGAAAGTTAGGAGTTTTAAGACT
ACCAGTGATTTCTTATGTATGACCCACATGGTACACAGAAATGTTATTAT
TGTCCAAGATCACAAGGACAGATCACATAAGAGGTAGATGGCTGTAGAGG
TGTTTCATTGGCTGAATATTTGCCATACCAGTTTGAGGACCAGAGTTCAG
ATACTCGGGACTTAAGTAAATACTCAGTGGGCACAGCGGCTTCCTGTAAC
TCCAGCCTCTGAAGCTGGAGACAAAGGATCCCTCATCAGTCTGGCTGGCA
AGACTAACTGTATCCGTGTGGTATCAGTGTGAGTTTGATTGACTCTGTCT
CCATGACTAAGATGTTTGAGCCATTGGTAATGATTCCTAACATCCATTTT
GGACATCTACATGTACACACACACAGGTGTTCATGTACAGGTACACCTA

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTATTTCCAGTCCCTGGAACCCAT
CTCCTGTCCTGCTTCTTGTTTCCCGTTTGTCAGTTAAACAGTAAAAGATC
TAAAGAGGGAAGATGATGTTATCCTGCTATGTAGACCTTGGTCTGCACAA
CACTAGTCATCAGTGTGCTTCCTGACTCTCTACTTAATTGACTACGTGCT
GTTTGCCCTCTGCTCTGTTTCCTTATCCTTCCTAATTCCTGGTTTCCTGG
TTCAATTGACTTTGTTTTTTTTTCTCCCACCGNGGAACCATAANCAGNCA
AAATTTTGGGTGGGATTCAAGGGACAAGAACCGCCNGNAAAAANTGANNN
ANGGANNNGGNNNNNNAAAAAANNGNAAAANGNAAAGGNNNNNGGGNCCN
NGGGNNNNANCNCGGNCCCCGCNNCNGCCCACGCGGACCCCCCCNNNNCC
CCCCCCCCCGCCGGCCCNGGGGGCCGACCCCCCGGGGGCGGCCCCCCGCC
CCGCGCCGGGGCCCCCCCGNNCCCGCCGNCGCGCCCGGGGCGCCCCCCGC
CGGGCGCCCGCGGCCCCCCCGCCCGGCCCGCCCCGCGGCCCCCCCCCGNC
CCACCCCGCGCCCGGGGGGGCCCCGCCGCCCGCCGGCCCCGCCGNNGGGC
GGGNGCCCGNCGCGCGCCCCCNNGGGCCGCCCCCCGCCGGCCGCCCGCCG
N

Query= MSMg01no295_a16.b1 MSMg01no295_a16.b1 CHROMAT_FILE:
MSMg01no295_a16.b1 PHD_FILE: MSMg01no295_a16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:51 2005
         (314 letters)



>mm_chr12_96790622_96791335
          Length = 714

 Score =  574 bits (297), Expect = e-168
 Identities = 306/309 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttatttaattatttctttaaacttttacccctagatgctagtacaaaaacataa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 gaattcttatttaattatttctttaaacttttacccctagatgctagtacaaaaacataa 454

                                                                       
Query: 65  aaccacttgtacatctggcagacgcaattatttatagatggtgtcggaatctatacttgt 124
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 aaccatttgtacatctggcagacgcaattatttatagatggtgtcggaatctatacttgt 394

                                                                       
Query: 125 gaaaacaaagtgaatgtcccctcatgcatgtgcaaacaaaggccatgtgcagtaaattat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 gaaaacaaagtgaatgtcccctcatgcatgtgcaaacaaaggccatgtgcagtaaattat 334

                                                                       
Query: 185 tcttgttttgcagttacaatattttgtgtgctattttgttttgtttcatttctaagcatc 244
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 333 tcttgttttgcagttacaatattttgtgtgctattttgttttgttttatttctaagcatc 274

                                                                       
Query: 245 cattccttggtcataagtaatgttaatgtttttcaaaaggaaagttaggagttttaagac 304
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 catcccttggtcataagtaatgttaatgtttttcaaaaggaaagttaggagttttaagac 214

                    
Query: 305 taccagtga 313
           |||||||||
Sbjct: 213 taccagtga 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no295_a16.g1 MSMg01no295_a16.g1 CHROMAT_FILE:
MSMg01no295_a16.g1 PHD_FILE: MSMg01no295_a16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:51 2005
         (178 letters)



>mm_chr12_96671760_96672337
          Length = 578

 Score =  337 bits (174), Expect = 3e-97
 Identities = 177/178 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacagtaaaagatctaaagagggaagatgatgttatcctgctatgtagaccttggtctgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacagtaaaagatctaaagagggaagatgatgttatcctgctatgtagaccttggtctgc 260

                                                                       
Query: 61  acaacactagtcatcagtgtgcttcctgactctctacttaattgactacgtgctgtttgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 acaacactagtcatcagtgtgcttcctgactctctacttaattgactacgtgctgcttgc 320

                                                                     
Query: 121 cctctgctctgtttccttatccttcctaattcctggtttcctggttcaattgactttg 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctctgctctgtttccttatccttcctaattcctggtttcctggttcaattgactttg 378


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 178
Length of database: 578
Length adjustment: 8
Effective length of query: 170
Effective length of database: 570
Effective search space:    96900
Effective search space used:    96900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)