BAC Information

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BAC

Clone NameMSMg01-295B18
Chromosome12 (Build37)
Map Location 115,778,110 - 115,778,420
singlet/doubletsinglet
Overlap geneIgh
Upstream geneAdam6, Ighv5-1, Ighv2-1, Ighv5-2, Ighv2-2, Ighv5-3, Ighv5-4, Ighv6-1, Ighv2-3, Ighv5-5, Ighv5-6, Ankrd12-like, Ighv5-7, EG668389, Ighv5-8, Ighv5-9, Ighv5-10, Ighv2-5, Ighv5-11, Ighv5-12, Ighv2-6, Ighv5-9-1, EG628098, Ighv2-9-1, Ighv5-13, Ighv2-6-8, EG629785, Ighv2-7, LOC668405, Ighv5-15, Ighv5-16, Ighv5-17, Ighv5-18, Ighv2-8, Ighv2-9, Ighv5-19, Ighv7-1, Ighv7-2, Ighv14-1, Ighv4-1, Ighv3-1, Ighv11-1, Ighv14-2, Ighv4-2, Ighv3-2, Ighv11-2, Ighv14-3, EG629812, Ighv6-2, Ighv9-1, Ighv12-1, EG629818, Ighv12-2, Ighv9-3, Ighv7-3, Ighv15-1, Ighv14-4, EG668438, Ighv7-4, EG629833, EG633457, Ighv13-1, Ighv3-6, EG636260, Ighv3-7, Ighv5-21, Ighv3-8, Ighv8-1, Ighv1-1, Ighv13-2, EG435321, Ighv6-3, EG628398, EG639510, Ighv6-6, EG432701, EG629849, Ighv1-2, Ighv10-1, Ighv1-3, Ighv1-4, Ighv10-2, EG668469, EG380809, Ighv1-6, EG668474
Downstream geneIghv10-4, Ighv1-8, Ighv15-2, Ighv1-9, Ighv1-10, Ighv1-11, EG629860, Ighv1-13, Ighv1-14, Ighv1-15, EG629866, Ighv1-17-1, Ighv1-17, Ighv1-18, EG668493, Ighv1-19, EG668497, Ighv1-21-1, Ighv1-21, Ighv1-22, Ighv1-23, Ighv1-24, Ighv1-25, Ighv1-26, Ighv1-27, Ighv1-28, Ighv1-29, Ighv1-30, Ighv1-31, Ighv1-32, Ighv1-33, Ighv1-34, EG668515, Ighv1-36, Ighv1-37, Ighv1-38, Ighv1-39, Ighv1-40, Ighv1-41, EG629906, EG629908, Ighv1-44, Ighv1-45, Ighv1-46, Ighv1-47, Ighv8-3, EG629919, Ighv1-48, Ighv1-49, EG640506, Ighv1-50, Ighv1-51, Ighv1-52, Ighv1-53, EG629930, EG668534, EG211331, Ighv1-55, EG634662, Ighv1-56, EG629936, Ighv8-7, Ighv1-57, Ighv8-8, Ighv1-58, EG432708, Ighv1-60, Ighv1-61, Ighv1-62, EG668544, EG238448, EG668549, EG432709, EG668552, Ighv1-63, Ighv1-64, Ighv8-10, Ighv1-65
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-295B18.T7 (MSMg01no295_b18.b1)MSMg01-295B18.TJ (MSMg01no295_b18.g1)
ACCAG423098AG423099
length735741
length of high quality
(start - end)		317 (43 - 359)293 (75 - 367)
definitionCHROMAT_FILE: MSMg01no295_b18.b1 PHD_FILE: MSMg01no295_b18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:56 2005CHROMAT_FILE: MSMg01no295_b18.g1 PHD_FILE: MSMg01no295_b18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:56 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCACTGATGTCATTCCTCTTCCTTGAAGCTATATAACACTTGCCTGCACT
AGATAACCTAGAAGGCGGGGAGAATTTGCTGATTAGTTGAAGGTTGGTTT
CTCTGATTACTGCAACCAATGTCCTTAGCTAAAAGTCTAAAGCTAAATTC
CAAGAAATTCTATTGTCCAATTTCTCCTCAGTCACATGATGAGGAATATA
ATTACAATATACATGAAGATAAATGACACCAAACCCAGACAAAACTATGG
ATGGCAAGCAGTGTTTGCTATTATAGCCTGATATAACAATCTCCTGAAAG
GCTTTACTAAACTCNGATCCCCANACCCGTCCATACTCACAGTCAATCAT
TGCATTGAACATGACCACCCACAAAAANGACTAAAAAAAGGGAGGGGGGG
AGCTAAAACCATCAAATGGAAAAAAGACAGCATTTTCAACATATCCTGCT
GGTTCAACAGGTGGTCAGCATGCAGAAGAATGAAAATCAATCCATGATCA
AATCTTATCTCCTTATACAAAGCTGAAGTTCAAATGCATCAAGGACCTCC
ACATAAATCCAGATACTTTGAAACTAAGAGAGGAGAAAGTGTGGAAGAGC
CTCAAACACAGGGTACTGGGCAAAATTTCCTGTACTGAAAAGCAATGGCA
TATGCTTTGACGATAAAAATTGAAAACAGGGACCT

AATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACCTTAGGAATACCGAATGGCAGA
GAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAA
TCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGTCTAAGATC
AAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAAC
ACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAAT
CCGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCA
GCAATACCTCTCCTGTTTTTTATATCCACCCCACGCCCCAACTGGTAAGA
AGGACACATGCTCCACTATGCCCCTAGCAAACATATTTATAATAGCCAGA
AGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAAT
GTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAAT
TTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGT
GAGGTAACACATTCACAAAGGAACTCGCACAATATGTACTCACTGATAAG
TGGATATTAGCCCAAAACCTAGGATACCCAAGATATAAGATATAATTTCC
TAAACACATGAAACCTCAGAAAAATGAAGACTGAAGTGTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no295_b18.b1 MSMg01no295_b18.b1 CHROMAT_FILE:
MSMg01no295_b18.b1 PHD_FILE: MSMg01no295_b18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:56 2005
         (317 letters)



>mm_chr12_115777906_115778622
          Length = 717

 Score =  516 bits (267), Expect = e-151
 Identities = 300/311 (96%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactgatgtcattcctcttccttgaagctatataacacttgcctgcactagataa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactgatgtcattcctcttccttgaagctatataacacttgcctgcactagataa 264

                                                                       
Query: 65  cctagaaggcggggagaatttgctgattagttgaaggttggtttctctgattactgcaac 124
           |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| 
Sbjct: 265 cctagaaggcagggagaatttgctgattagttgaaggttggttcctctgattactgcaaa 324

                                                                       
Query: 125 caatgtccttagctaaaagtctaaagctaaattccaagaaattctattgtccaatttctc 184
           |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||
Sbjct: 325 caatgtccttagctaaaaatctaaagctaaattctaagaaattctattgtccaatttgtc 384

                                                                       
Query: 185 ctcagtcacatgatgaggaatataattacaatatacatgaagataaatgacaccaaaccc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctcagtcacatgatgaggaatataattacaatatacatgaagataaatgacaccaaaccc 444

                                                                       
Query: 245 agacaaaactatggatggcaagcagtgtttgctattatagcctgatataacaatctcctg 304
           ||||||||||||||||||||||||||||||||||  | ||||||||||| || |||||||
Sbjct: 445 agacaaaactatggatggcaagcagtgtttgctaaaagagcctgatatagcagtctcctg 504

                      
Query: 305 aaaggctttac 315
           |||||||||||
Sbjct: 505 aaaggctttac 515


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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