BAC Information

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BAC

Clone NameMSMg01-295I01
Chromosome12 (Build37)
Map Location 92,986,608 - 92,986,920
singlet/doubletsinglet
Overlap geneSton2
Upstream geneLOC100039295, 4930544I03Rik, 4930534B04Rik, 5430427M07Rik, Tshr, Gtf2a1, EG666955
Downstream geneLOC100039631, Sel1l, LOC100039367, EG432681, LOC667589, LOC100039387, LOC100039425, LOC628116
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-295I01.T7 (MSMg01no295_i01.b1)MSMg01-295I01.TJ (MSMg01no295_i01.g1)
ACCAG423379AG423380
length742586
length of high quality
(start - end)
319 (51 - 369)---
definitionCHROMAT_FILE: MSMg01no295_i01.b1 PHD_FILE: MSMg01no295_i01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:27 2005CHROMAT_FILE: MSMg01no295_i01.g1 PHD_FILE: MSMg01no295_i01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTCTATTCTTCCTTAGCTTATTTAGATCAGATATGAGCCAA
AGAGAGGCTGACAGGACACGCACTGCCGGGAACCGCCCAGCACATCCCCG
TGAAATGCATTCTAGGTACATGTCGTGAGATGTGCAACGCTTGGAGCTCA
AAAGCCACAGGGGAACCTAGTAATTGTGAAGCTCAGCTCATGCTGGAATT
AGTTCCTCAGTAAAAACCTCATGCCACTTTTAGCCTGTGATTCACGAAGT
GAGGCTTGGAGTCACCACAGATGAGCAGTGAGTCACCGTCAGCAGCAGGA
GCGACAGACTCGGAGATAGTAGAAATCCCACGCCCCGGTTGGGTTGCTAT
AGTAAGGGCACCTCTCCTCTTCATCACCATCACTTAAGCCTTACACCATG
GGTAAGGAGAACGCACTCGTCTAACAGCAGAGGCGACAGAAGGAGATTGT
CTCAGGCCAGTCCCTCGTATGAGCTCTGTGCTCCTGGAAATGTGCCAGCT
GTCCTTCATGATAGCAACCCTTCCTTAAGCAGCCATAACTTAGCTGAAGG
AGACAGGACAGAAGAGCAAACACAAGGCAAATAACTGCCTGCCGAAGGTC
ATGCAGGGGTGGTGCGACTGTCAGCCATGGCGAGATCTCTGAGATCTCCA
TGGAAAACCATAGGCCTGGTGCAGGTTGCATAACATATGAAT
TTCATTTCCTCCCTCACGGGGANNAAATAAANNNNTTTTCGAATGATXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXCGGTAATTCCAGGNACAATCCAGGGGTGGGTTAAGAAA
GAGAATCCTGGCTCAATAGAACGAAGGAGAGAGAGAGAGAGAGAATATCA
GAATAGTCCAAACAACCGAACCAAAAAAAGAACCCCTTCTCCCAAAAAAG
GGCAAGAACCCCCTTTATGATGTAAAGAACCCCTGGGAATTTTTACTCCG
GGGAACCCCCCTTAAAAGGGGGAAATTTTTTGAAAACCTTTTTTATATAT
TCCTTTATAGCGCCAGGGGTAGCGGGTTTTTAAAAAAAAGTGGGGCCCAA
TATTTTTTTTTTTTTTAGCGGGTTATATAAGAGAAATACCCTTTCTTTAA
AAAGAGGGGCCCATATATTTATTTTTTTTTTTCTCGCCCCCCCCCCCCCC
ACCCCCACCCCCCCTTGGTATGGGCGGCCGGATTCTGCTTCACATCTCTA
CATAATTCTACACAAATATTGTGACCCCCCCCCCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no295_i01.b1 MSMg01no295_i01.b1 CHROMAT_FILE:
MSMg01no295_i01.b1 PHD_FILE: MSMg01no295_i01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:27 2005
         (319 letters)



>mm_chr12_92986405_92987123
          Length = 719

 Score =  590 bits (305), Expect = e-173
 Identities = 311/313 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctctattcttccttagcttatttagatcagatatgagccaaagagaggctgaca 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctctattcttccttagcttatttagatcagatatgagccaaagagaggctgaca 263

                                                                       
Query: 64  ggacacgcactgccgggaaccgcccagcacatccccgtgaaatgcattctaggtacatgt 123
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 264 ggacacgcactgccgggaaccgcccagcacatccccatgaaatgcattctaggtacatgt 323

                                                                       
Query: 124 cgtgagatgtgcaacgcttggagctcaaaagccacaggggaacctagtaattgtgaagct 183
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cgtgagatgtgcaacgctcggagctcaaaagccacaggggaacctagtaattgtgaagct 383

                                                                       
Query: 184 cagctcatgctggaattagttcctcagtaaaaacctcatgccacttttagcctgtgattc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cagctcatgctggaattagttcctcagtaaaaacctcatgccacttttagcctgtgattc 443

                                                                       
Query: 244 acgaagtgaggcttggagtcaccacagatgagcagtgagtcaccgtcagcagcaggagcg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 acgaagtgaggcttggagtcaccacagatgagcagtgagtcaccgtcagcagcaggagcg 503

                        
Query: 304 acagactcggaga 316
           |||||||||||||
Sbjct: 504 acagactcggaga 516


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)