BAC Information

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BAC

Clone NameMSMg01-295J16
Chromosome12 (Build37)
Map Location 119,366,276 - 119,553,093
singlet/doubletdoublet
Overlap geneDnahc11, Sp4
Upstream genePtprn2, LOC432713, LOC100042461, Rapgef5, A930023M06Rik, Cdca7l
Downstream geneLOC100042993, LOC668611, EG668615, LOC620665, Sp8, Abcb5, Itgb8, EG627557
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-295J16.T7 (MSMg01no295_j16.b1)MSMg01-295J16.TJ (MSMg01no295_j16.g1)
ACCAG423450AG423451
length770746
length of high quality
(start - end)
232 (129 - 360)286 (72 - 357)
definitionCHROMAT_FILE: MSMg01no295_j16.b1 PHD_FILE: MSMg01no295_j16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:35 2005CHROMAT_FILE: MSMg01no295_j16.g1 PHD_FILE: MSMg01no295_j16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:35 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,366,276 - 119,366,504)(119,552,816 - 119,553,093)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGACTT
CCACATAAATTTTCCAGGAATCCAGGGAAGGATCAGCTCTGAAGAGCTTC
CGGTTCTCCTAAACTCAAAGCAATAGAGGGTTGGGGTTAATGATGACCAA
CATAAAAGGGAAGCTCACCATACTGAAGAAAGGATTGCATTTCTGTGCAT
GGCACTGAAACATTCAAACCTAAGGCTATAGAACCTTGAGGTAGAAGGCA
AATGCTACAGGACTTTATAGTAGTATAGTACTAATCTCACATACCACATG
TGTTCAAAAAGTATCCTTTATAATAAAAATCAACATGAAAATTGTTATCT
TCAAATATTGGGATGAATTCCAGTAGCTGGGCCCACATTATACCCCAGGC
TCTAGTTCTTGCTCCCCCCCAAAAATTGATCTCAAAATCTCGTGGGGGGG
GGGGGACATTTCCTTATGTCCTTCTGAGGAAATTATTCTGGGACATTGGA
ATATTACCCAGGCGTTTATAGTAATCCTATGAGCTTGCTGCCCTTGAATG
TTAGTTCTACTTCTCCTGTAGATTGTTGTGCTTCCCGACCTGTATCTGCC
ATATTCCTTATTCTGTTCCTTAGTATGCCTGTTTTACCCATTTCCGATAA
CCCGATCACACCAACCTTTCTCATTTGTGGCTACCCTTAACGTTTCCTTT
CTTCCTTATCAATATCCATCCTTTCCTATATCCCTTACCTATTTCCTCTA
CTTCCATTCCCTTTCTTTGT
TACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTCAGCCAGGGCAGGAAACCTTTCAAGGA
TAAGAGAACAGCCCTAGAACCAGATGCTCCAGTTTGAATCTGAGCTCTGC
CCAGTTGCTGGAATGATGAGTCTGGGAAAATTACTGAACTTTTTCCATCA
ATCTCTTCATCCAAAACTGGGAATTCCACTGTACTTCTCGGGGTTGTTGG
AGGGACGCATCCCACTCTGTGACACTGCTAGTAAAGCATCTGGTGCCTGA
TGAAGCCCTTGTTCCTTGCATGCTGTTAATTCTGTGACATTTCCAAATTT
ACTGTCTGAAGTTCNNTCTCCCGNACCTCCCAGTCTACTTTTATCATTGA
GCCACAGAGCTGACCCCAGCCTGAAAAAAAAAAAACCTCGGGGGAGAGAG
TGTAGTCTCAATGCTGCCACTTAGCTTGTGTGCTATTTTAGGCAAACCTT
TCAGCCTCTTTGGGGTGCTGTATAATCAAGGAGCAAACATCTGCACAAGT
GCTCTGTCAACAGTATGCTTGTTTCACCCTGAGTAAGGAACTGCGGCTGA
CAACAGGAGACAAGTTTACCTGGTTCCCCTTTGAAAATCTTACCCTTTAC
CATAATGCACTTTATACAATGGCCAATTAACTCTCTGTGCTTGGATTTAC
CCCGTTATTTCACTTTGTTCGCTTGCTTTGCTTTTCTCCCCACTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no295_j16.b1 MSMg01no295_j16.b1 CHROMAT_FILE:
MSMg01no295_j16.b1 PHD_FILE: MSMg01no295_j16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:35 2005
         (232 letters)



>mm_chr12_119366076_119366707
          Length = 632

 Score =  412 bits (213), Expect = e-120
 Identities = 225/229 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggttggggttaatgatgaccaacataaaagggaagctcaccatactgaagaaaggattgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggttggggttaatgatgaccaacataaaagggaagctcaccatactgaagaaaggattgc 260

                                                                       
Query: 61  atttctgtgcatggcactgaaacattcaaacctaaggctatagaaccttgaggtagaagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atttctgtgcatggcactgaaacattcaaacctaaggctatagaaccttgaggtagaagg 320

                                                                       
Query: 121 caaatgctacaggactttatagtagtatagtactaatctcacataccacatgtgttcaaa 180
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 321 caaatgctacaggactttatagtagtatagcactaatctcacataccacatgtgttcaaa 380

                                                            
Query: 181 aagtatcctttataataaaaatcaacatgaaaattgttatcttcaaata 229
           |||||||||||| || |||||||||||||||||||| ||||||||||||
Sbjct: 381 aagtatcctttagaaaaaaaatcaacatgaaaattgctatcttcaaata 429


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 632
Length adjustment: 9
Effective length of query: 223
Effective length of database: 623
Effective search space:   138929
Effective search space used:   138929
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no295_j16.g1 MSMg01no295_j16.g1 CHROMAT_FILE:
MSMg01no295_j16.g1 PHD_FILE: MSMg01no295_j16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:35 2005
         (286 letters)



>mm_chr12_119552434_119553119
          Length = 686

 Score =  507 bits (262), Expect = e-148
 Identities = 274/278 (98%)
 Strand = Plus / Minus

                                                                       
Query: 9   gggcaggaaacctttcaaggataagagaacagccctagaaccagatgctccagtttgaat 68
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 gggcaggaaacctttcaaggataagagaacagccctagaaccagatgctccagtttgaat 601

                                                                       
Query: 69  ctgagctctgcccagttgctggaatgatgagtctgggaaaattactgaactttttccatc 128
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 ctgagctctgcccagttgctggaatgatgagtctgggaaaattactgaactttttccatc 541

                                                                       
Query: 129 aatctcttcatccaaaactgggaattccactgtacttctcggggttgttggagggacgca 188
           |||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||
Sbjct: 540 aatctcttcatccaaaaccgggaattccactgtgcttctcggggtttttggagggacgca 481

                                                                       
Query: 189 tcccactctgtgacactgctagtaaagcatctggtgcctgatgaagcccttgttccttgc 248
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 tcccactctgtgacactgctagtaaagcatctggtgcctgatgaagcccttgttccttgc 421

                                                 
Query: 249 atgctgttaattctgtgacatttccaaatttactgtct 286
           | ||||||||||||||||||||||||||||||||||||
Sbjct: 420 aggctgttaattctgtgacatttccaaatttactgtct 383


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)