BAC Information

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BAC

Clone NameMSMg01-296A15
Chromosome12 (Build37)12 (Build37)
Map Location 58,388,864 - 58,389,38558,388,903 - 58,389,386
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneMbip, EG621837, E030019B13Rik, Titf1, LOC100039993, Nkx2-9, Pax9, Slc25a21, AU021838
Downstream geneLOC100040044, Foxa1, 4921506M07Rik, EG217600, BC042761, Sstr1, Clec14a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-296A15.T7 (MSMg01no296_a15.b1)MSMg01-296A15.TJ (MSMg01no296_a15.g1)
ACCAG423760AG423761
length744740
length of high quality
(start - end)		668 (77 - 744)630 (75 - 704)
definitionCHROMAT_FILE: MSMg01no296_a15.b1 PHD_FILE: MSMg01no296_a15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:32:08 2005CHROMAT_FILE: MSMg01no296_a15.g1 PHD_FILE: MSMg01no296_a15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:32:08 2005
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(58,388,864 - 58,389,385)(58,388,903 - 58,389,386)
sequence
TCATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATTCTTCCACTGAGGCACAAGTA
ATAACAGAATTATTCATACTAAACTCCAAAAATAAAGAAACACAGAATCT
TATTAAACATACTAAAATAAATTATATTTTAGAAAACCTACACTCTATAT
CACTGCTTTAAGGCAGTGCTCAACCTACCTGATGCCGCGACCATTTAACA
CAGTTCCCCATGTTGTGGTGATCCACAATCATAAAATTAGTTTGATTGCT
TTCTATACTATGTTTTGAATCATAACTTAAATATCTGATATTCAGGATAT
CTAACATGCGACCCCTGTGAAAGGTTCATCTGATCCCCAAAGGGATCGCG
ACCTACAGGTTGAAGATCACTGTTCTAAGGGGAGAGTCCAGAGTTCCTCA
GGCAGCCAATCCTTGTTGGCCACCTGCCACAATCCTCCATCCCTCCATCT
GATATTCTAGACGTTCATCTATAGAAGCTACTAGCACTCTGTTAAGCCAA
GTCATAGGAAGCTAAACAGTAAATTTCATTACACTTGCAGCCCTGTTCTT
TATACAACTTTAAAAAATGCATAAAATCATAAAATACAATTTTAAATTTG
TACTTGTAGAAATGAATATGTATTTAAGCCTTATGCCAATGGGGTACTAG
TCTGAAGGTTTTTATTGCAATCAGAATCAGTTATTACTGATTAT

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCATTCTTCCACTGAGGCACAAGTAAT
AACAGAATTATTCATACTAAACTTTAAAAATAAAGAAACACAGAATCTTA
TTAAACATACTAAAATAAATTATATTTTAGAAAACCTACACTCTATATCA
CTGCTTTAAGGCAGTGCTCAACCTACCTGATGCCGCGACCATTTAACACA
GTTCCCCATGTTGTGGTGATCCACAATCATAAAATTAGTTTGATTGCTTT
CTATACTATGTTTTGAATCATAACTTAAATATCTGATATTCAGGATATCT
AACATGCGACCCCTGTGAAAGGTTCATTTGATCCCCAAAGGGATCGCGAC
CTACAGGTTGAAGATCACTGTTCTAAGGGGAGAGTCCAGAGTTCCTCAGG
CAGCCAATCCTTGTTGGCCACCTGCCACAATCCTCCATCCCTCCATCTGA
TATTCTAGACGTTCATCTATAGAAGCTACTAGCACTCTGTTAAGCCAAGT
CATAGGAAGCTAAACAGTAAATTTCATTACACTTGCAGCCCTGTTCTTTA
TACAACTTTAAAAAATGCATAAAATCATAAAATACAATTTTAAATTTGTA
CTTGTAGAAATGAATATGTATTTAAGCCTTATGCCAATGGGGTACTAGTC
TGAAGGTTTTTATTGCAATCAGAATCAGTTATTACTGATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no296_a15.b1 MSMg01no296_a15.b1 CHROMAT_FILE:
MSMg01no296_a15.b1 PHD_FILE: MSMg01no296_a15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:32:08 2005
         (668 letters)



>mm_chr12_58388318_58389385
          Length = 1068

 Score =  963 bits (498), Expect = 0.0
 Identities = 516/522 (98%)
 Strand = Plus / Minus

                                                                        
Query: 145  caacctacctgatgccgcgaccatttaacacagttccccatgttgtggtgatccacaatc 204
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1068 caacctacctgatgccgcgaccatttaacacagttccccatgttgtggtgatccacaatc 1009

                                                                        
Query: 205  ataaaattagtttgattgctttctatactatgttttgaatcataacttaaatatctgata 264
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1008 acaaaattagtttgattgctttctatactatgttttgaatcataacttaaatatctgata 949

                                                                        
Query: 265  ttcaggatatctaacatgcgacccctgtgaaaggttcatctgatccccaaagggatcgcg 324
            |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 948  ttcaggatatctaacatgtgacccctgtgaaaggttcatttgatccccaaagggatcgcg 889

                                                                        
Query: 325  acctacaggttgaagatcactgttctaaggggagagtccagagttcctcaggcagccaat 384
            |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 888  acctacaggttgaagatcactgttctaaggggagagtccacagttcctcaggcagccaat 829

                                                                        
Query: 385  ccttgttggccacctgccacaatcctccatccctccatctgatattctagacgttcatct 444
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 828  ccttgttggccacctgccacaatcctccatccctccatctgatattctagacgttcgtct 769

                                                                        
Query: 445  atagaagctactagcactctgttaagccaagtcataggaagctaaacagtaaatttcatt 504
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768  atagaagctactagcactctgttaagccaagtcataggaagctaaacagtaaatttcatt 709

                                                                        
Query: 505  acacttgcagccctgttctttatacaactttaaaaaatgcataaaatcataaaatacaat 564
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708  acacttgcagccctgttctttatacaactttaaaaaatgcataaaatcataaaatacaat 649

                                                                        
Query: 565  tttaaatttgtacttgtagaaatgaatatgtatttaagccttatgccaatggggtactag 624
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648  tttaaatttgtacttgtagaaatgaatatgtatttaagccttatgccaatggggtactag 589

                                                      
Query: 625  tctgaaggtttttattgcaatcagaatcagttattactgatt 666
            ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 588  tctaaaggtttttattgcaatcagaatcagttattactgatt 547


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1068
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1058
Effective search space:   696164
Effective search space used:   696164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no296_a15.g1 MSMg01no296_a15.g1 CHROMAT_FILE:
MSMg01no296_a15.g1 PHD_FILE: MSMg01no296_a15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:32:08 2005
         (630 letters)



>mm_chr12_58388357_58389386
          Length = 1030

 Score =  905 bits (468), Expect = 0.0
 Identities = 480/484 (99%)
 Strand = Plus / Minus

                                                                        
Query: 144  tcaacctacctgatgccgcgaccatttaacacagttccccatgttgtggtgatccacaat 203
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1030 tcaacctacctgatgccgcgaccatttaacacagttccccatgttgtggtgatccacaat 971

                                                                        
Query: 204  cataaaattagtttgattgctttctatactatgttttgaatcataacttaaatatctgat 263
            || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 970  cacaaaattagtttgattgctttctatactatgttttgaatcataacttaaatatctgat 911

                                                                        
Query: 264  attcaggatatctaacatgcgacccctgtgaaaggttcatttgatccccaaagggatcgc 323
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 910  attcaggatatctaacatgtgacccctgtgaaaggttcatttgatccccaaagggatcgc 851

                                                                        
Query: 324  gacctacaggttgaagatcactgttctaaggggagagtccagagttcctcaggcagccaa 383
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 850  gacctacaggttgaagatcactgttctaaggggagagtccacagttcctcaggcagccaa 791

                                                                        
Query: 384  tccttgttggccacctgccacaatcctccatccctccatctgatattctagacgttcatc 443
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 790  tccttgttggccacctgccacaatcctccatccctccatctgatattctagacgttcgtc 731

                                                                        
Query: 444  tatagaagctactagcactctgttaagccaagtcataggaagctaaacagtaaatttcat 503
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730  tatagaagctactagcactctgttaagccaagtcataggaagctaaacagtaaatttcat 671

                                                                        
Query: 504  tacacttgcagccctgttctttatacaactttaaaaaatgcataaaatcataaaatacaa 563
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670  tacacttgcagccctgttctttatacaactttaaaaaatgcataaaatcataaaatacaa 611

                                                                        
Query: 564  ttttaaatttgtacttgtagaaatgaatatgtatttaagccttatgccaatggggtacta 623
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610  ttttaaatttgtacttgtagaaatgaatatgtatttaagccttatgccaatggggtacta 551

                
Query: 624  gtct 627
            ||||
Sbjct: 550  gtct 547


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1030
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1020
Effective search space:   632400
Effective search space used:   632400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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