Query= MSMg01no297_g06.b1 MSMg01no297_g06.b1 CHROMAT_FILE:
MSMg01no297_g06.b1 PHD_FILE: MSMg01no297_g06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:33:49 2005
(689 letters)
>mm_chr12_100218143_100219231
Length = 1089
Score = 1234 bits (638), Expect = 0.0
Identities = 674/686 (98%), Gaps = 3/686 (0%)
Strand = Plus / Minus
Query: 5 gaattccagaataccgctgtagcacctccaataggagctggtccttagcaacttttccta 64
||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1080 gaattccagaagacaggtgtagcacctccaataggagctggtccttagcaacttttccta 1021
Query: 65 aaacct-taagacaagtgagagcttcttctttttcaaaacagacatgtgtgaatagtttt 123
||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1020 aaa-ctgtaagacaagtgagagcttcttctatttcaaaacagacatgtgtgaatagtttt 962
Query: 124 gtattcatgctataaaaatactgtgtttgtgtctttagtcaataagaccctttatttaca 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961 gtattcatgctataaaaatactgtgtttgtgtctttagtcaataagaccctttatttaca 902
Query: 184 tcacaaacatttgagctgtttattttattttataacatttatttattttatttatatgag 243
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 tcacaaacatttgaactgtttattttattttataacatttatttattttatttatatgag 842
Query: 244 tacactgtagctgtcttcagacacaccagaagagggcattggatcccattacagatggtt 303
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct: 841 tacactgtagctgtcttcagacacaccagaagagggcattggattccattacagatgttt 782
Query: 304 gtgagccaccatgtggttgctgggaattgaactcaggaccttcagaagagcagtcagtgc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 gtgagccaccatgtggttgctgggaattgaactcaggaccttcagaagagcagtcagtgc 722
Query: 364 tcttaaccactgagccatctctccagccctgaactgcttattaatcctccagacagactt 423
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 721 tcttaaccactgagccatctctccagccctgaactgtttattaatcctccagacagactt 662
Query: 424 gcttttcatggtagagtggagacatgccctggctcctttgttcatgtctgattaaaaaga 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 gcttttcatggtagagtggagacatgccctggctcctttgttcatgtctgattaaaaaga 602
Query: 484 gctcactcaccaaacgtggtggtgcacgcctttaatcccagcactcaggaggcagaggca 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 gctcactcaccaaacgtggtggtgcacgcctttaatcccagcactcaggaggcagaggca 542
Query: 544 ggaggggctctgagagtgtgagaccaccagcctggtctacagagtgagttctagaagagc 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ggaggggctctgagagtgtgagaccaccagcctggtctacagagtgagttctagaagagc 482
Query: 604 tgaggctagtcttgagaagaccaaaaccagaatcagctcagttcttcccgttggctcctg 663
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cg-ggctagtcttgagaagaccaaaaccagaatcagctcagttcttcccgttggctcctg 423
Query: 664 gacattcagtgattggcaacagaatg 689
||||||||||||||||||||||||||
Sbjct: 422 gacattcagtgattggcaacagaatg 397
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 689
Length of database: 1089
Length adjustment: 10
Effective length of query: 679
Effective length of database: 1079
Effective search space: 732641
Effective search space used: 732641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no297_g06.g1 MSMg01no297_g06.g1 CHROMAT_FILE:
MSMg01no297_g06.g1 PHD_FILE: MSMg01no297_g06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:33:49 2005
(663 letters)
>mm_chr12_100058116_100059179
Length = 1064
Score = 1224 bits (633), Expect = 0.0
Identities = 659/671 (98%), Gaps = 9/671 (1%)
Strand = Plus / Plus
Query: 1 agaagaagaggcccttagctaggtatcactggggccgcctttaaggaagctatctaatga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 agaagaagaggcccttagctaggtatcactggggccgcctttaaggaagctatctaatga 254
Query: 61 gaccatcattcatatctaagaaggtctccaaggt-----ctcaagcaaacagactcggtc 115
|||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 255 gaccatcattcatatctaagaaggtctcca-ggtaccaactcaagcaaacagactcggtc 313
Query: 116 atcattcagggcaagtttaagacttggctaccaaagtactgttaaagagaaaaatgccaa 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 atcattcagggcaagtttaagacttggctaccaaagtactgttaaagagaaaaatgccaa 373
Query: 176 ctttgtgtggtggtgttcatctataatgccagcactctctgggaagctgaagcaagagga 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 ctttgtgtggtggtgttcatctataatgccagcactctctgggaagctgaagcaagagga 433
Query: 236 ttgctgtgagctcaggggtagcctaagtgacactattagtaccagggcagccagagccac 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 ttgctgtgagctcaggggtagcctaagtgacactattagtaccagggcagccagagccac 493
Query: 296 agagcaaatctctctcactcccactcttgggaatagggaatagttccctgaataggagaa 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 agagcaaatctctctcactcccactcttgggaatagggaatagttccctgaataggagaa 553
Query: 356 caaagctaggcaggtgtctgagatcccagcatttggacagctaagaagggacctcaaatt 415
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 554 caaagctaggcaggtgtctgagagcccagcatttggacagctaagaagggacctcaaatt 613
Query: 416 tcattcagctttgactatata--cttaagattctgtctcagaacaccaaaataaaatgaa 473
||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 614 tcattcagctttggctatatatacttaagattctgtctcagaacaccaaaataaaatgaa 673
Query: 474 ataaaaccacaagggtgaggatgcagctgttttggaacactggccatcacctgaggcctg 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 ataaaaccacaagggtgaggatgcagctgttttggaacactggccatcacctgaggcctg 733
Query: 534 gattcagacctaggggcaggaggagggtgatggtaaaaaaaaaa-tcactaacagaactg 592
|||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 734 gattcagacccaggggcaggaggagggtgatggtaaaaaaaaaaatcactaacagaactg 793
Query: 593 aacgggatcacagaagtctgctatcacgccttcctggcagacggtgatccaagcacaggg 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 aacgggatcacagaagtctgctatcacgccttcctggcagacggtgatccaagcacaggg 853
Query: 653 cacttgcactt 663
|||||||||||
Sbjct: 854 cacttgcactt 864
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1064
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1054
Effective search space: 688262
Effective search space used: 688262
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
