BAC Information

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BAC

Clone NameMSMg01-299A24
Chromosome12 (Build37)
Map Location 89,983,889 - 90,159,878
singlet/doubletdoublet
Overlap geneLOC100039261, EG666915
Upstream geneLOC100042239, LOC100042786, BB287469, LOC100038964, LOC673658, LOC100038992, LOC100038982, LOC674027, LOC100039042, LOC100039052, LOC100039076, LOC100039087, LOC100039100, LOC100039191, LOC100039203, LOC627873, LOC100039162, LOC627881, LOC100039129, LOC636517, LOC544884, LOC100039226, LOC432715, EG667350, LOC546543, EG667388, LOC627971, LOC667395, LOC100039315, EG638008, EG666862, EG435337, LOC100039154, LOC633093, LOC667440, LOC100039383, EG266459, LOC667475, LOC620915, LOC435314, Adck1
Downstream geneNrxn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-299A24.T7 (MSMg01no299_a24.b1)MSMg01-299A24.TJ (MSMg01no299_a24.g1)
ACCAG425940AG425941
length751749
length of high quality
(start - end)
523 (50 - 572)433 (77 - 509)
definitionCHROMAT_FILE: MSMg01no299_a24.b1 PHD_FILE: MSMg01no299_a24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:35:52 2005CHROMAT_FILE: MSMg01no299_a24.g1 PHD_FILE: MSMg01no299_a24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:35:53 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,983,889 - 89,984,407)(90,159,446 - 90,159,878)
sequence
CCCCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCC
GCGGAATTCTTACTGACCTGAGAGAAAAATCAGAAATCACTTCAACTTGG
GATTCAGTAAGAAAGCTAGATCTGGTTTGCATTCTGATTCTGTGGAAGTT
GTCATAGACAGCTCCAGCTGCTAAGGTTTTTTTCTGTCAGCCATGGAATC
TTAGTGCTAATAGAAAACGTTGGAATCCAGTTTTGCCCCTCATTGTAGAG
ACACCTAAACTGACACTTAGAGGTAGAGGTTTGGGGTTCTATAAATAAAG
TCATACAGCAAGTTGGTGTTGGCATGCCTTGAGATCTGGACACAGTGGTG
CTTAAAACACTGTGAAGCTGAGTAGAAACTGTAAGAGCACACATGTAGAA
ATTCTAGAAGGGCCGGACTGTTTGCCCCTGCAATGCAAACCAGCCTGGCA
GTCACTTTGGGTGAAGGCTAAGGTCTATGTTCTCATAGAATTGTTTTCTC
CCCTAAGAACCTTGAGTTCCAAGTAAGAGTGGAATTAAAAGAATCAATGT
TATGCTTGAATGTTCTAGAAGACCAATCCGAGGTCATCTGTCAGCCCTTG
CCCTTGGAATGTCCTTTCTCAGGGCACTGAAACACTGTTGGTGGTGGCTT
ATAACCTCTGCCTCACTTCCTCCCTGTGTTGCCTGAACATCTTGCTGCAT
TGCCCCTTGCTACTTATAACCTTTTTTTGAAGCACGCTGCTGAGGTTTCT
G
CCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATAGAAGAGAACCTTCAGGAACAT
TTAATAGAAAGGAGCTAAAAATGGACAATAGGAGGCCTCAGGACTAAGAA
TCACATCATGGCGAGAAGCCCATCAAGTTGGTTATTGCTTAGAAAGAGGC
TGTTTTCTAAAGAATTCAGAATTTACACTAGCCATGAATAGTTAAGGCCA
AGTTCACTCTGTCTTTGTAAGCTTGAGATTATTCAGGAAAAAAAAAAAAG
ACACCAACACAATAAAAATAGATGTTTCCTAATACAAGGCGGTTCTAGAT
AGTTGTCCCTTTTATTAACCCCTTTCTATAGCTTTCATATTTTTAGAGGA
TTGGCAGTAATTTTAAATAGATGTTTTTAAGAAAAATGTGTTTAACATTT
TAGGAAATTAAAAGTAAAGCTCGATAATGACCTGATAACCATTTCGGTGA
AAAAGAGAATGTTCACTGAGATTTGCCTTGTTGTGGGTGATTTTAGCCCA
GGGAACCTTCATGGACAGAGCCTCCATCCTGCCTAATAACTGTTATCTCT
TGATGTCACTGCTACTCCCATTCACTCACTGGGAGATTACCGTGCGGTAG
GATACTGCACCAGGTGTCACGTGCTTATTGTCTGATTCACTGATCAGAGC
ATCCTTTCCCTGGAAAGCACCGGATTACCTCCATTTATAAAGACCTGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no299_a24.b1 MSMg01no299_a24.b1 CHROMAT_FILE:
MSMg01no299_a24.b1 PHD_FILE: MSMg01no299_a24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:52 2005
         (523 letters)



>mm_chr12_89983685_89984607
          Length = 923

 Score =  980 bits (507), Expect = 0.0
 Identities = 516/519 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttactgacctgagagaaaaatcagaaatcacttcaacttgggattcagtaagaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttactgacctgagagaaaaatcagaaatcacttcaacttgggattcagtaagaa 264

                                                                       
Query: 65  agctagatctggtttgcattctgattctgtggaagttgtcatagacagctccagctgcta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agctagatctggtttgcattctgattctgtggaagttgtcatagacagctccagctgcta 324

                                                                       
Query: 125 aggtttttttctgtcagccatggaatcttagtgctaatagaaaacgttggaatccagttt 184
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aggtttttttctgtcagtcatggaatcttagtgctaatagaaaacgttggaatccagttt 384

                                                                       
Query: 185 tgcccctcattgtagagacacctaaactgacacttagaggtagaggtttggggttctata 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgcccctcattgtagagacacctaaactgacacttagaggtagaggtttggggttctata 444

                                                                       
Query: 245 aataaagtcatacagcaagttggtgttggcatgccttgagatctggacacagtggtgctt 304
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 445 aataaagtcatacagcaagttggtgttggtatgccttgagatctggacacagtggtgctt 504

                                                                       
Query: 305 aaaacactgtgaagctgagtagaaactgtaagagcacacatgtagaaattctagaagggc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aaaacactgtgaagctgagtagaaactgtaagagcacacatgtagaaattctagaagggc 564

                                                                       
Query: 365 cggactgtttgcccctgcaatgcaaaccagcctggcagtcactttgggtgaaggctaagg 424
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 565 cggactgtttgcccctgcaatgcaaaccagcctagcagtcactttgggtgaaggctaagg 624

                                                                       
Query: 425 tctatgttctcatagaattgttttctcccctaagaaccttgagttccaagtaagagtgga 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tctatgttctcatagaattgttttctcccctaagaaccttgagttccaagtaagagtgga 684

                                                  
Query: 485 attaaaagaatcaatgttatgcttgaatgttctagaaga 523
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 685 attaaaagaatcaatgttatgcttgaatgttctagaaga 723


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 923
Length adjustment: 10
Effective length of query: 513
Effective length of database: 913
Effective search space:   468369
Effective search space used:   468369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no299_a24.g1 MSMg01no299_a24.g1 CHROMAT_FILE:
MSMg01no299_a24.g1 PHD_FILE: MSMg01no299_a24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:53 2005
         (433 letters)



>mm_chr12_90159246_90160078
          Length = 833

 Score =  775 bits (401), Expect = 0.0
 Identities = 425/433 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atagaagagaaccttcaggaacatttaatagaaaggagctaaaaatggacaataggaggc 60
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 atagaagagaagcttcaggaacatttaatagaaaggagctaaaaatggacaataggaggc 574

                                                                       
Query: 61  ctcaggactaagaatcacatcatggcgagaagcccatcaagttggttattgcttagaaag 120
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 573 ctcaggactaagaatcacatcatggtgagaagcccatcaagttggttattgcttagaaag 514

                                                                       
Query: 121 aggctgttttctaaagaattcagaatttacactagccatgaatagttaaggccaagttca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 aggctgttttctaaagaattcagaatttacactagccatgaatagttaaggccaagttca 454

                                                                       
Query: 181 ctctgtctttgtaagcttgagattattcaggaaaaaaaaaaaagacaccaacacaataaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 ctctgtctttgtaagcttgagattattcaggaaaaaaaaaaaagacaccaacacaataaa 394

                                                                       
Query: 241 aatagatgtttcctaatacaaggcggttctagatagttgtcccttttattaacccctttc 300
           ||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 393 aatggatgtttccaaatacaaggcggttctagatagttgtcccgtttattaacccctttc 334

                                                                       
Query: 301 tatagctttcatatttttagaggattggcagtaattttaaatagatgtttttaagaaaaa 360
           ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 333 tatagttttcatatttttagaggattggcagtaattttaaatagatatttttaagaaaaa 274

                                                                       
Query: 361 tgtgtttaacattttaggaaattaaaagtaaagctcgataatgacctgataaccatttcg 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 273 tgtgtttaacattttaggaaattaaaagtaaagctcgataatgacctgataaccatttgg 214

                        
Query: 421 gtgaaaaagagaa 433
           |||||||||||||
Sbjct: 213 gtgaaaaagagaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 833
Length adjustment: 9
Effective length of query: 424
Effective length of database: 824
Effective search space:   349376
Effective search space used:   349376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)