Query= MSMg01no299_d08.b1 MSMg01no299_d08.b1 CHROMAT_FILE:
MSMg01no299_d08.b1 PHD_FILE: MSMg01no299_d08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:04 2005
(623 letters)
>mm_chr12_11104779_11105801
Length = 1023
Score = 1110 bits (574), Expect = 0.0
Identities = 609/622 (97%), Gaps = 6/622 (0%)
Strand = Plus / Plus
Query: 6 aattctggctaact-t-tcctataggacagtttagatactaataaaatcgagaaacaaca 63
|||||||||||||| | | ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 204 aattctggctaactatat--tataggacagtttagatactaataaaatcaagaaacaaca 261
Query: 64 gtacttaatgtaaaaaaaaaaa--gaagagtaagattatcttataactaggaaagtgtga 121
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct: 262 gtacttaatgtaaaaaaaaaaaaagaagagtaagattatcttataactaggaaagtatga 321
Query: 122 attttgatgtacgatcagaaataaaacatacactaagaaacttagaaaatttgtgcactg 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 attttgatgtacgatcagaaataaaacatacactaagaaacttagaaaatttgtgcactg 381
Query: 182 aacatgtgccgagcattctcttctcattgttctctgaaatataggacaacaccattgaca 241
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 aacatgtgccaagcattctcttctcattgttctctgaaatataggacaacaccattgaca 441
Query: 242 ccttgctgacactgagtgtggtgtcaccgatcatataaggaccatttaaaacatgcaggc 301
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 442 ccttgctgacactgagtgtggtgtcaccgatcatataaggaccatttaaaatatgcaggc 501
Query: 302 gaacatgcgtattatttatgcacatactacaccaatgctgaattactgaaaatttattta 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 gaacatgcgtattatttatgcacatactacaccaatgctgaattactgaaaatttattta 561
Query: 362 ttaagcaccttatatcccgtagatatcactaaacttcagggtttctgaagttacactaca 421
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ttaagcaccttatatcttgtagatatcactaaacttcagggtttctgaagttacactaca 621
Query: 422 tggggttgcaggatgtgttctgcagggatcttagaaaccaagggatgactgtcattatac 481
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 tggggttgcagggtgtgttctgcagggatcttagaaaccaagggatgactgtcattatac 681
Query: 482 aatgtatatatgcacatatatattgaatcatccatctactaaatataagtatgggtcaag 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 aatgtatatatgcacatatatattgaatcatccatctactaaatataagtatgggtcaag 741
Query: 542 ctaatttatgatccataaatggggagattttcctgattcaaaaattctagttgtgtaaaa 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 ctaatttatgatccataaatggggagattttcctgattcaaaaattctagttgtgtaaaa 801
Query: 602 gtaattttatatggggagaaat 623
||||||||||||||||||||||
Sbjct: 802 gtaattttatatggggagaaat 823
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1023
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1013
Effective search space: 620969
Effective search space used: 620969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no299_d08.g1 MSMg01no299_d08.g1 CHROMAT_FILE:
MSMg01no299_d08.g1 PHD_FILE: MSMg01no299_d08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:04 2005
(366 letters)
>mm_chr12_11271919_11272684
Length = 766
Score = 669 bits (346), Expect = 0.0
Identities = 361/366 (98%)
Strand = Plus / Minus
Query: 1 ggaacttaggggcggtggtagtggttaactccgggccaggctggtagatgacagaagtgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 ggaacttaggggcggtggtagtggttaactccgggccaggctggtagatgacagaagtgt 507
Query: 61 gccttccacagccgcgaagagggggtgtctgggtaagtcccgcgggacaggctgagaccg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 gccttccacagccgcgaagagggggtgtctgggtaagtcccgcgggacaggctgagaccg 447
Query: 121 gcctcccggtcctaccggcttctagaacactggctcccgagagggcgagcgcatccacag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 gcctcccggtcctaccggcttctagaacactggctcccgagagggcgagcgcatccacag 387
Query: 181 ccgccctgccaggtccccttcaagcccatctgggcgaccttccccgatgcctactcacac 240
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 386 ccgccctgccaggtccccttcaagcccatctgggcgaccttccccgatgcccactcacac 327
Query: 241 accgcattgtggttccgattggaaagaatagatttcttacagcatttaccacttacgagc 300
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 accgcattgaggttccgattggaaagaatagatttcttacagcatttaccacttacgagt 267
Query: 301 gtctttacggttgtctatgtagtcctttctcccctaccagctcccgcccaggttgacacc 360
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 266 gtctttacggttgtctatgtagtcctttctcccctaccagctccagcctaggttgacacc 207
Query: 361 gcttta 366
||||||
Sbjct: 206 gcttta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 366
Length of database: 766
Length adjustment: 9
Effective length of query: 357
Effective length of database: 757
Effective search space: 270249
Effective search space used: 270249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
